Hb_000062_280

Information

Type -
Description -
Location Contig62: 228598-230044
Sequence    

Annotation

kegg
ID rcu:RCOM_1081200
description plant mitotic spindle assembly checkpoint protein mad2, putative
nr
ID XP_002514967.1
description plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
swissprot
ID Q9LU93
description Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana GN=MAD2 PE=1 SV=1
trembl
ID B9RMJ8
description Plant mitotic spindle assembly checkpoint protein mad2, putative OS=Ricinus communis GN=RCOM_1081200 PE=4 SV=1
Gene Ontology
ID GO:0007094
description mitotic spindle checkpoint protein mad2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51440: 229092-229991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_280 0.0 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
2 Hb_001052_020 0.0682971345 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
3 Hb_000853_250 0.0871060382 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
4 Hb_165110_010 0.0917878556 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
5 Hb_001141_440 0.0971132754 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
6 Hb_000962_060 0.0998181344 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
7 Hb_000506_050 0.103370111 - - PREDICTED: thymidine kinase [Jatropha curcas]
8 Hb_089140_070 0.1222194493 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
9 Hb_085829_010 0.1230528107 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
10 Hb_004055_090 0.1272322116 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
11 Hb_000977_190 0.1276288213 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001213_060 0.1285332246 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
13 Hb_001205_290 0.1300445565 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
14 Hb_001971_040 0.1334728438 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
15 Hb_010080_050 0.1348346787 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
16 Hb_012092_040 0.1364729322 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
17 Hb_001635_140 0.1372361631 - - protein with unknown function [Ricinus communis]
18 Hb_002307_150 0.1374287473 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
19 Hb_000086_510 0.1377993662 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
20 Hb_001141_270 0.1379484784 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_280 Hb_000062_280 Hb_001052_020 Hb_001052_020 Hb_000062_280--Hb_001052_020 Hb_000853_250 Hb_000853_250 Hb_000062_280--Hb_000853_250 Hb_165110_010 Hb_165110_010 Hb_000062_280--Hb_165110_010 Hb_001141_440 Hb_001141_440 Hb_000062_280--Hb_001141_440 Hb_000962_060 Hb_000962_060 Hb_000062_280--Hb_000962_060 Hb_000506_050 Hb_000506_050 Hb_000062_280--Hb_000506_050 Hb_001052_020--Hb_165110_010 Hb_001052_020--Hb_000962_060 Hb_089140_070 Hb_089140_070 Hb_001052_020--Hb_089140_070 Hb_001052_020--Hb_000506_050 Hb_012092_040 Hb_012092_040 Hb_001052_020--Hb_012092_040 Hb_000853_250--Hb_001141_440 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000162_190 Hb_000162_190 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_025787_020 Hb_025787_020 Hb_000853_250--Hb_025787_020 Hb_165110_010--Hb_000506_050 Hb_000086_510 Hb_000086_510 Hb_165110_010--Hb_000086_510 Hb_000320_240 Hb_000320_240 Hb_165110_010--Hb_000320_240 Hb_000157_020 Hb_000157_020 Hb_165110_010--Hb_000157_020 Hb_001141_440--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_001141_440--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_009252_080 Hb_009252_080 Hb_001141_440--Hb_009252_080 Hb_009545_060 Hb_009545_060 Hb_000962_060--Hb_009545_060 Hb_000089_090 Hb_000089_090 Hb_000962_060--Hb_000089_090 Hb_000962_060--Hb_012092_040 Hb_001247_060 Hb_001247_060 Hb_000962_060--Hb_001247_060 Hb_000506_050--Hb_000157_020 Hb_000339_050 Hb_000339_050 Hb_000506_050--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_000506_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000506_050--Hb_004357_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0279647 0.108029 5.32056 10.5999 0 0.0332646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36922 0.712877

CAGE analysis