Hb_000062_300

Information

Type -
Description -
Location Contig62: 243889-244799
Sequence    

Annotation

kegg
ID rcu:RCOM_1082060
description hypothetical protein
nr
ID XP_012085614.1
description PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17913 PE=4 SV=1
Gene Ontology
ID GO:0005777
description PREDICTED: uncharacterized protein LOC105644761

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51441: 243854-244839
cDNA
(Sanger)
(ID:Location)		 040_K19.ab1: 243860-244839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_300 0.0 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
2 Hb_014497_080 0.0795133697 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
3 Hb_003732_040 0.1533082028 - - putative esterase family protein [Populus trichocarpa]
4 Hb_042871_010 0.1764188461 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
5 Hb_000012_070 0.1800491906 - - cytochrome P450, putative [Ricinus communis]
6 Hb_033834_050 0.1850697678 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003891_080 0.1852067768 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
8 Hb_086692_020 0.1874555649 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
9 Hb_012573_010 0.1993808773 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
10 Hb_012305_020 0.2017656845 - - beta-1,3-glucanase [Hevea brasiliensis]
11 Hb_006277_070 0.2057219162 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000258_180 0.2085489835 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
13 Hb_000656_410 0.2123576502 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
14 Hb_003398_020 0.2124482789 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
15 Hb_001266_030 0.2214438986 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
16 Hb_002784_100 0.2218530673 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
17 Hb_000045_210 0.2255433161 - - -
18 Hb_061383_010 0.2292343298 - - beta-1,3-glucanase [Hevea brasiliensis]
19 Hb_028271_020 0.231768356 - - acyl-CoA oxidase, putative [Ricinus communis]
20 Hb_000594_090 0.2339842391 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000062_300 Hb_000062_300 Hb_014497_080 Hb_014497_080 Hb_000062_300--Hb_014497_080 Hb_003732_040 Hb_003732_040 Hb_000062_300--Hb_003732_040 Hb_042871_010 Hb_042871_010 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_033834_050 Hb_033834_050 Hb_000062_300--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080 Hb_014497_080--Hb_003732_040 Hb_014497_080--Hb_033834_050 Hb_014497_080--Hb_042871_010 Hb_003398_020 Hb_003398_020 Hb_014497_080--Hb_003398_020 Hb_086692_020 Hb_086692_020 Hb_014497_080--Hb_086692_020 Hb_006277_070 Hb_006277_070 Hb_003732_040--Hb_006277_070 Hb_003732_040--Hb_042871_010 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_000656_410 Hb_000656_410 Hb_042871_010--Hb_000656_410 Hb_042871_010--Hb_033834_050 Hb_011609_110 Hb_011609_110 Hb_042871_010--Hb_011609_110 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_000258_180 Hb_000258_180 Hb_000012_070--Hb_000258_180 Hb_032202_250 Hb_032202_250 Hb_000012_070--Hb_032202_250 Hb_012573_010 Hb_012573_010 Hb_000012_070--Hb_012573_010 Hb_000284_190 Hb_000284_190 Hb_000012_070--Hb_000284_190 Hb_034482_040 Hb_034482_040 Hb_000012_070--Hb_034482_040 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_033834_050--Hb_011609_110 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_003891_080--Hb_000656_410 Hb_003891_080--Hb_033834_050 Hb_003777_360 Hb_003777_360 Hb_003891_080--Hb_003777_360 Hb_000130_230 Hb_000130_230 Hb_003891_080--Hb_000130_230 Hb_003891_080--Hb_042871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.555598 4.21582 4.96574 11.9308 0.0560138 0.401602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7627 243.993 26.741 38.8475 4.02531

CAGE analysis