Hb_000062_330

Information

Type -
Description -
Location Contig62: 255386-263316
Sequence    

Annotation

kegg
ID cmo:103484230
description glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic-like
nr
ID AFK44506.1
description unknown [Lotus japonicus]
swissprot
ID P26518
description Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1
trembl
ID I3SW64
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51442: 260067-263369 , PASA_asmbl_51443: 260067-262758
cDNA
(Sanger)
(ID:Location)		 005_L23.ab1: 260120-262129 , 006_B03.ab1: 260125-262093 , 015_B05.ab1: 260125-261566 , 015_P06.ab1: 260125-261903 , 016_M16.ab1: 260132-261471 , 017_A03.ab1: 260120-261880 , 017_L07.ab1: 260124-262073 , 019_G23.ab1: 255369-261505 , 020_N06.ab1: 260121-262112 , 022_G14.ab1: 260119-261908 , 024_M06.ab1: 260137-260818 , 025_K24.ab1: 260121-262106 , 028_C09.ab1: 260119-261749 , 032_K04.ab1: 260120-262107 , 036_J20.ab1: 260120-262098 , 036_M24.ab1: 260125-262111 , 040_H20.ab1: 260124-262117 , 042_O06.ab1: 260125-262074 , 049_O14.ab1: 260144-260839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_330 0.0 - - unknown [Lotus japonicus]
2 Hb_000244_170 0.0859389627 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
3 Hb_007811_040 0.0914745905 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
4 Hb_002687_120 0.0925470551 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
5 Hb_000832_190 0.0958200314 - - Rab3 [Hevea brasiliensis]
6 Hb_000890_130 0.1037277888 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
7 Hb_001195_060 0.1041247173 - - Protein yrdA, putative [Ricinus communis]
8 Hb_003119_060 0.1056290598 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
9 Hb_010368_050 0.1063288939 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_004994_210 0.1077669497 - - phosphomannomutase family protein [Populus trichocarpa]
11 Hb_001951_130 0.1083259528 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
12 Hb_000392_340 0.1086323995 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
13 Hb_000127_140 0.1086864401 - - transporter-related family protein [Populus trichocarpa]
14 Hb_002184_090 0.1094388666 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000181_350 0.1104186108 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
16 Hb_006570_160 0.1134870838 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_010407_140 0.1141728977 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
18 Hb_000622_130 0.1144992579 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
19 Hb_000774_020 0.1148046089 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
20 Hb_007101_110 0.1151497583 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_330 Hb_000062_330 Hb_000244_170 Hb_000244_170 Hb_000062_330--Hb_000244_170 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_010577_030 Hb_010577_030 Hb_007811_040--Hb_010577_030 Hb_007811_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_007811_040--Hb_004041_020 Hb_003119_060 Hb_003119_060 Hb_007811_040--Hb_003119_060 Hb_007811_040--Hb_000890_130 Hb_002687_120--Hb_000890_130 Hb_002687_120--Hb_003119_060 Hb_003266_030 Hb_003266_030 Hb_002687_120--Hb_003266_030 Hb_000028_520 Hb_000028_520 Hb_002687_120--Hb_000028_520 Hb_000721_030 Hb_000721_030 Hb_002687_120--Hb_000721_030 Hb_006132_090 Hb_006132_090 Hb_002687_120--Hb_006132_090 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_000890_130--Hb_003119_060 Hb_002686_080 Hb_002686_080 Hb_000890_130--Hb_002686_080 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_000127_140 Hb_000127_140 Hb_001195_060--Hb_000127_140 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.892 60.9298 436.175 375.231 103.574 107.159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
194.085 202.629 242.45 145.168 154.856

CAGE analysis