Hb_000062_340

Information

Type -
Description -
Location Contig62: 270070-274427
Sequence    

Annotation

kegg
ID rcu:RCOM_1081930
description ankyrin repeat-containing protein, putative
nr
ID XP_012085631.1
description PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
swissprot
ID Q9GKW8
description Ankyrin repeat and death domain-containing protein 1A (Fragment) OS=Macaca fascicularis GN=ANKDD1A PE=2 SV=3
trembl
ID A0A067JS49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17924 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51445: 270587-274475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_340 0.0 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
2 Hb_000975_300 0.0560619252 - - Rab2 [Hevea brasiliensis]
3 Hb_007594_120 0.0807546748 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
4 Hb_003632_010 0.0927374055 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010142_070 0.0974602512 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
6 Hb_000302_220 0.1028261444 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
7 Hb_000735_130 0.1064980136 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000431_010 0.1081051291 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
9 Hb_020301_040 0.1086828901 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
10 Hb_002876_120 0.1087143396 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
11 Hb_000023_340 0.1122955731 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
12 Hb_000963_180 0.1123974497 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
13 Hb_012505_010 0.1132318216 - - mak, putative [Ricinus communis]
14 Hb_000976_360 0.1141580456 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
15 Hb_007047_010 0.1148402212 - - PREDICTED: expansin-A13 [Jatropha curcas]
16 Hb_000061_300 0.11642218 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
17 Hb_002182_030 0.118421799 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
18 Hb_005463_020 0.1186030412 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
19 Hb_024714_060 0.1201206337 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
20 Hb_001762_060 0.12022729 - - pantothenate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_340 Hb_000062_340 Hb_000975_300 Hb_000975_300 Hb_000062_340--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_000062_340--Hb_007594_120 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_010142_070 Hb_010142_070 Hb_000062_340--Hb_010142_070 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_000735_130 Hb_000735_130 Hb_000062_340--Hb_000735_130 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000963_180 Hb_000963_180 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_002876_120 Hb_002876_120 Hb_000975_300--Hb_002876_120 Hb_007594_120--Hb_002876_120 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_000046_110 Hb_000046_110 Hb_003632_010--Hb_000046_110 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_001109_020 Hb_001109_020 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003455_040 Hb_003455_040 Hb_003632_010--Hb_003455_040 Hb_000377_060 Hb_000377_060 Hb_003632_010--Hb_000377_060 Hb_010142_070--Hb_000975_300 Hb_010142_070--Hb_000735_130 Hb_003376_120 Hb_003376_120 Hb_010142_070--Hb_003376_120 Hb_000162_040 Hb_000162_040 Hb_010142_070--Hb_000162_040 Hb_027402_070 Hb_027402_070 Hb_010142_070--Hb_027402_070 Hb_000302_220--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000302_220--Hb_001842_040 Hb_138585_060 Hb_138585_060 Hb_000302_220--Hb_138585_060 Hb_000023_340 Hb_000023_340 Hb_000302_220--Hb_000023_340 Hb_000302_220--Hb_000963_180 Hb_001140_060 Hb_001140_060 Hb_000302_220--Hb_001140_060 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_044662_070 Hb_044662_070 Hb_000735_130--Hb_044662_070 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0204 2.03141 11.0026 11.8327 12.0109 22.5502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3822 45.2847 59.2547 7.17121 10.712

CAGE analysis