Hb_000062_350

Information

Type -
Description -
Location Contig62: 275430-277616
Sequence    

Annotation

kegg
ID rcu:RCOM_1081920
description amino acid transporter, putative
nr
ID XP_002514999.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9LRB5
description Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1
trembl
ID B9RMN0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1081920 PE=4 SV=1
Gene Ontology
ID GO:0005886
description lysine histidine transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51445: 270587-274475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_350 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_001847_020 0.1233061838 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
3 Hb_000926_020 0.1273986784 - - -
4 Hb_000576_010 0.128518182 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
5 Hb_000123_120 0.1286554817 - - actin depolymerizing factor 4 [Hevea brasiliensis]
6 Hb_000317_030 0.1311817276 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
7 Hb_000175_450 0.1353926123 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
8 Hb_001159_100 0.1373085367 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
9 Hb_000190_140 0.1380085091 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
10 Hb_019654_100 0.1416666187 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
11 Hb_003862_050 0.1423528624 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
12 Hb_001140_200 0.1424465192 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
13 Hb_000754_060 0.1427312715 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_178968_110 0.1441164169 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
15 Hb_003861_080 0.1466018252 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
16 Hb_000890_040 0.1467737725 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
17 Hb_001823_100 0.1477803729 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
18 Hb_188279_010 0.1514073861 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
19 Hb_002890_280 0.1517059492 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
20 Hb_000721_010 0.152292494 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000062_350 Hb_000062_350 Hb_001847_020 Hb_001847_020 Hb_000062_350--Hb_001847_020 Hb_000926_020 Hb_000926_020 Hb_000062_350--Hb_000926_020 Hb_000576_010 Hb_000576_010 Hb_000062_350--Hb_000576_010 Hb_000123_120 Hb_000123_120 Hb_000062_350--Hb_000123_120 Hb_000317_030 Hb_000317_030 Hb_000062_350--Hb_000317_030 Hb_000175_450 Hb_000175_450 Hb_000062_350--Hb_000175_450 Hb_001847_020--Hb_000926_020 Hb_188279_010 Hb_188279_010 Hb_001847_020--Hb_188279_010 Hb_000721_010 Hb_000721_010 Hb_001847_020--Hb_000721_010 Hb_011571_010 Hb_011571_010 Hb_001847_020--Hb_011571_010 Hb_000000_080 Hb_000000_080 Hb_001847_020--Hb_000000_080 Hb_003683_160 Hb_003683_160 Hb_001847_020--Hb_003683_160 Hb_000926_020--Hb_000721_010 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000926_020--Hb_000123_120 Hb_000926_020--Hb_188279_010 Hb_003862_050 Hb_003862_050 Hb_000926_020--Hb_003862_050 Hb_000576_010--Hb_000317_030 Hb_004994_170 Hb_004994_170 Hb_000576_010--Hb_004994_170 Hb_004204_070 Hb_004204_070 Hb_000576_010--Hb_004204_070 Hb_004223_130 Hb_004223_130 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290 Hb_000123_120--Hb_000008_470 Hb_000754_060 Hb_000754_060 Hb_000123_120--Hb_000754_060 Hb_000123_120--Hb_003862_050 Hb_010795_010 Hb_010795_010 Hb_000123_120--Hb_010795_010 Hb_000123_120--Hb_010381_070 Hb_011224_110 Hb_011224_110 Hb_000123_120--Hb_011224_110 Hb_000317_030--Hb_004994_170 Hb_001671_080 Hb_001671_080 Hb_000317_030--Hb_001671_080 Hb_002681_110 Hb_002681_110 Hb_000317_030--Hb_002681_110 Hb_000317_030--Hb_004223_130 Hb_002527_070 Hb_002527_070 Hb_000317_030--Hb_002527_070 Hb_001159_100 Hb_001159_100 Hb_000175_450--Hb_001159_100 Hb_000175_450--Hb_000754_060 Hb_001913_010 Hb_001913_010 Hb_000175_450--Hb_001913_010 Hb_000500_040 Hb_000500_040 Hb_000175_450--Hb_000500_040 Hb_029584_130 Hb_029584_130 Hb_000175_450--Hb_029584_130 Hb_000953_010 Hb_000953_010 Hb_000175_450--Hb_000953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15815 0.339084 0.572053 0.0899532 0.457641 0.819315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.686629 0.682294 1.43462 0.363808 0.118274

CAGE analysis