Hb_000062_370

Information

Type -
Description -
Location Contig62: 287741-296219
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06620g
description POPTRDRAFT_726104; 3-oxoacyl-[acyl-carrier-protein] reductase
nr
ID AGT95889.1
description beta-ketoacyl-ACP reductase [Vernicia fordii]
swissprot
ID Q93X62
description 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1
trembl
ID T1VYI2
description Beta-ketoacyl-ACP reductase OS=Vernicia fordii GN=KAR1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51454: 291437-296191
cDNA
(Sanger)
(ID:Location)		 029_G09.ab1: 293659-296191 , 039_E24.ab1: 293349-296076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_370 0.0 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
2 Hb_032986_010 0.0781065166 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
3 Hb_004109_280 0.0795228929 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
4 Hb_002997_080 0.0813554772 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_000804_040 0.0837938743 - - protein with unknown function [Ricinus communis]
6 Hb_000915_260 0.0855518468 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
7 Hb_000076_130 0.0857947095 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
8 Hb_009545_080 0.0872823245 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
9 Hb_001141_020 0.0895523985 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
10 Hb_003939_050 0.0899830178 - - protein with unknown function [Ricinus communis]
11 Hb_002272_130 0.0902425507 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
12 Hb_000190_030 0.0934403627 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
13 Hb_000224_160 0.0948152459 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_021409_180 0.0970799735 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
15 Hb_065500_060 0.0976225083 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
16 Hb_029879_010 0.0993156551 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
17 Hb_000883_020 0.0997774444 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_001205_120 0.1001130347 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
19 Hb_000136_110 0.1014414691 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
20 Hb_002276_170 0.1017628996 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000062_370 Hb_000062_370 Hb_032986_010 Hb_032986_010 Hb_000062_370--Hb_032986_010 Hb_004109_280 Hb_004109_280 Hb_000062_370--Hb_004109_280 Hb_002997_080 Hb_002997_080 Hb_000062_370--Hb_002997_080 Hb_000804_040 Hb_000804_040 Hb_000062_370--Hb_000804_040 Hb_000915_260 Hb_000915_260 Hb_000062_370--Hb_000915_260 Hb_000076_130 Hb_000076_130 Hb_000062_370--Hb_000076_130 Hb_032986_010--Hb_002997_080 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_000883_020 Hb_000883_020 Hb_032986_010--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_032986_010--Hb_009545_080 Hb_002272_130 Hb_002272_130 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120 Hb_004109_280--Hb_002997_080 Hb_004109_280--Hb_009545_080 Hb_000260_100 Hb_000260_100 Hb_004109_280--Hb_000260_100 Hb_004109_280--Hb_002272_130 Hb_027472_120 Hb_027472_120 Hb_004109_280--Hb_027472_120 Hb_004109_280--Hb_000883_020 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_000076_130--Hb_001141_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2256 14.0667 46.1095 21.2321 36.962 40.5727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3002 19.3613 29.6308 24.1592 37.9288

CAGE analysis