Hb_000062_380

Information

Type -
Description -
Location Contig62: 296526-297317
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01020g
description POPTRDRAFT_570715; F-box family protein
nr
ID XP_012085893.1
description PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
swissprot
ID Q9FXC7
description Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1
trembl
ID B9I6Z5
description F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g67623

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51456: 297920-300366 , PASA_asmbl_51458: 298057-300234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_380 0.0 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
2 Hb_001276_020 0.2041872058 - - hypothetical protein VITISV_003263 [Vitis vinifera]
3 Hb_002483_020 0.2050086271 - - -
4 Hb_000318_260 0.2079266681 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
5 Hb_012867_010 0.2189260025 - - Vacuolar protein sorting 45 [Theobroma cacao]
6 Hb_005928_080 0.23187188 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
7 Hb_000088_030 0.2356907179 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
8 Hb_156593_050 0.2501819651 - - PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
9 Hb_000018_170 0.2513572679 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
10 Hb_000661_160 0.2516879604 - - hexokinase [Manihot esculenta]
11 Hb_003177_010 0.2525139584 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
12 Hb_002267_090 0.253188228 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
13 Hb_140595_010 0.2546150899 - - -
14 Hb_010795_060 0.2560535623 - - -
15 Hb_004994_340 0.2578470733 - - -
16 Hb_006634_040 0.2597310404 - - hypothetical protein VITISV_030841 [Vitis vinifera]
17 Hb_005271_020 0.2636542616 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
18 Hb_000580_130 0.2643555102 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
19 Hb_001758_020 0.2645342947 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000789_100 0.2656249676 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000062_380 Hb_000062_380 Hb_001276_020 Hb_001276_020 Hb_000062_380--Hb_001276_020 Hb_002483_020 Hb_002483_020 Hb_000062_380--Hb_002483_020 Hb_000318_260 Hb_000318_260 Hb_000062_380--Hb_000318_260 Hb_012867_010 Hb_012867_010 Hb_000062_380--Hb_012867_010 Hb_005928_080 Hb_005928_080 Hb_000062_380--Hb_005928_080 Hb_000088_030 Hb_000088_030 Hb_000062_380--Hb_000088_030 Hb_002267_090 Hb_002267_090 Hb_001276_020--Hb_002267_090 Hb_000661_160 Hb_000661_160 Hb_001276_020--Hb_000661_160 Hb_000025_070 Hb_000025_070 Hb_001276_020--Hb_000025_070 Hb_004032_060 Hb_004032_060 Hb_001276_020--Hb_004032_060 Hb_006634_040 Hb_006634_040 Hb_001276_020--Hb_006634_040 Hb_005271_080 Hb_005271_080 Hb_001276_020--Hb_005271_080 Hb_140595_010 Hb_140595_010 Hb_002483_020--Hb_140595_010 Hb_002483_020--Hb_000318_260 Hb_002483_020--Hb_000088_030 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_006631_010 Hb_006631_010 Hb_002483_020--Hb_006631_010 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000318_260--Hb_000088_030 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_136765_010 Hb_136765_010 Hb_012867_010--Hb_136765_010 Hb_002141_020 Hb_002141_020 Hb_012867_010--Hb_002141_020 Hb_089889_020 Hb_089889_020 Hb_012867_010--Hb_089889_020 Hb_107847_010 Hb_107847_010 Hb_012867_010--Hb_107847_010 Hb_068922_010 Hb_068922_010 Hb_012867_010--Hb_068922_010 Hb_125861_010 Hb_125861_010 Hb_012867_010--Hb_125861_010 Hb_005928_080--Hb_005271_080 Hb_051017_010 Hb_051017_010 Hb_005928_080--Hb_051017_010 Hb_001247_170 Hb_001247_170 Hb_005928_080--Hb_001247_170 Hb_001279_330 Hb_001279_330 Hb_005928_080--Hb_001279_330 Hb_000261_520 Hb_000261_520 Hb_005928_080--Hb_000261_520 Hb_000175_490 Hb_000175_490 Hb_005928_080--Hb_000175_490 Hb_000088_030--Hb_140595_010 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000580_130 Hb_000580_130 Hb_000088_030--Hb_000580_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126504 0.0249217 0.136981 0.13084 0.623123 0.256354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205181 0.0537772 0 0.0217746 0

CAGE analysis