Hb_000062_390

Information

Type -
Description -
Location Contig62: 297876-300449
Sequence    

Annotation

kegg
ID rcu:RCOM_1081870
description hypothetical protein
nr
ID XP_012085627.1
description PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
swissprot
ID Q9CAF9
description Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana GN=At1g67620 PE=2 SV=1
trembl
ID A0A067JSC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17920 PE=3 SV=1
Gene Ontology
ID GO:0016491
description protein iojap- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51456: 297920-300366 , PASA_asmbl_51457: 299415-299686 , PASA_asmbl_51458: 298057-300234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_390 0.0 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
2 Hb_001634_040 0.0665877964 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
3 Hb_002588_010 0.0705217337 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_019516_100 0.0743145015 - - 40S ribosomal protein S14, putative [Ricinus communis]
5 Hb_001155_040 0.076320085 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
6 Hb_000093_110 0.0782637625 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
7 Hb_007304_070 0.0791418059 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_001158_230 0.0808731335 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_000645_140 0.0813147344 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
10 Hb_007575_070 0.0817016372 - - Histone H3.2 [Glycine soja]
11 Hb_000317_070 0.0829819175 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
12 Hb_000172_420 0.0832348437 - - 60S ribosomal protein L30, putative [Ricinus communis]
13 Hb_000193_120 0.0849785766 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
14 Hb_001085_270 0.0851995483 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_000915_120 0.0862637538 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
16 Hb_008948_050 0.0867805473 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
17 Hb_172221_010 0.0873358961 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
18 Hb_120823_010 0.0873769502 - - -
19 Hb_000111_340 0.0875272496 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
20 Hb_026398_010 0.0896790128 - - hypothetical protein B456_010G132100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000062_390 Hb_000062_390 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_002588_010 Hb_002588_010 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_007575_070 Hb_007575_070 Hb_001634_040--Hb_007575_070 Hb_000805_130 Hb_000805_130 Hb_001634_040--Hb_000805_130 Hb_000181_300 Hb_000181_300 Hb_001634_040--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_001634_040--Hb_000012_100 Hb_000193_120 Hb_000193_120 Hb_001634_040--Hb_000193_120 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_019516_100--Hb_000042_260 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_005463_140 Hb_005463_140 Hb_001155_040--Hb_005463_140 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_007304_070--Hb_000111_340 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_002431_050 Hb_002431_050 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8423 12.3861 26.8259 29.9288 19.6168 27.0863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.252 184.298 59.8324 31.5744 24.0005

CAGE analysis