Hb_000062_490

Information

Type -
Description -
Location Contig62: 351441-359720
Sequence    

Annotation

kegg
ID rcu:RCOM_1081160
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012085637.1
description PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9CAG3
description Lipoxygenase 6, chloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=2 SV=1
trembl
ID A0A067JS52
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_17929 PE=3 SV=1
Gene Ontology
ID GO:0005515
description lipoxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51476: 351452-353975 , PASA_asmbl_51477: 354171-355578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_490 0.0 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
2 Hb_000692_030 0.1111356722 - - nucleoredoxin, putative [Ricinus communis]
3 Hb_012727_010 0.1325911852 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000094_250 0.137505701 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
5 Hb_000094_120 0.1445224297 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
6 Hb_001178_080 0.1598223696 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
7 Hb_006615_160 0.1623541251 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
8 Hb_003579_040 0.1642908559 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
9 Hb_003025_150 0.1645195158 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002324_040 0.166910689 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
11 Hb_001856_170 0.1691389641 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
12 Hb_025432_010 0.1711125023 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
13 Hb_000120_310 0.172186126 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
14 Hb_002119_040 0.1723455446 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_010174_190 0.1732453286 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
16 Hb_001688_070 0.1745155077 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X1 [Jatropha curcas]
17 Hb_033234_010 0.1766235583 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
18 Hb_006831_080 0.1771673506 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
19 Hb_000009_300 0.1771938622 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
20 Hb_000567_350 0.1776103288 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_490 Hb_000062_490 Hb_000692_030 Hb_000692_030 Hb_000062_490--Hb_000692_030 Hb_012727_010 Hb_012727_010 Hb_000062_490--Hb_012727_010 Hb_000094_250 Hb_000094_250 Hb_000062_490--Hb_000094_250 Hb_000094_120 Hb_000094_120 Hb_000062_490--Hb_000094_120 Hb_001178_080 Hb_001178_080 Hb_000062_490--Hb_001178_080 Hb_006615_160 Hb_006615_160 Hb_000062_490--Hb_006615_160 Hb_042491_010 Hb_042491_010 Hb_000692_030--Hb_042491_010 Hb_001277_420 Hb_001277_420 Hb_000692_030--Hb_001277_420 Hb_000692_030--Hb_012727_010 Hb_028841_010 Hb_028841_010 Hb_000692_030--Hb_028841_010 Hb_003579_040 Hb_003579_040 Hb_000692_030--Hb_003579_040 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_012727_010--Hb_003579_040 Hb_000009_140 Hb_000009_140 Hb_000094_250--Hb_000009_140 Hb_033234_010 Hb_033234_010 Hb_000094_250--Hb_033234_010 Hb_000094_250--Hb_000094_120 Hb_000120_310 Hb_000120_310 Hb_000094_250--Hb_000120_310 Hb_001123_190 Hb_001123_190 Hb_000094_250--Hb_001123_190 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_002030_180 Hb_002030_180 Hb_000094_120--Hb_002030_180 Hb_000094_120--Hb_006615_160 Hb_005539_260 Hb_005539_260 Hb_000094_120--Hb_005539_260 Hb_005016_020 Hb_005016_020 Hb_001178_080--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_001178_080--Hb_000000_110 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_017857_010 Hb_017857_010 Hb_006615_160--Hb_017857_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47313 20.0107 13.4437 21.2205 0.336419 2.19728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157769 0.395031 2.65609 13.3617 3.20341

CAGE analysis