Hb_000062_520

Information

Type -
Description -
Location Contig62: 369461-369955
Sequence    

Annotation

kegg
ID rcu:RCOM_1254790
description hypothetical protein
nr
ID XP_002525763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1254790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_520 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003106_170 0.1136914617 - - Endonuclease III, putative [Ricinus communis]
3 Hb_001484_080 0.1327470449 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_000667_140 0.1562472934 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
5 Hb_007044_250 0.1570729221 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002304_180 0.1611692151 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
7 Hb_000977_270 0.1642258944 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
8 Hb_067069_010 0.1687965109 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
9 Hb_036790_120 0.1707273156 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
10 Hb_000754_050 0.1716372971 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_000402_170 0.1752977816 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
12 Hb_000012_010 0.1784472065 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
13 Hb_003494_030 0.1793326636 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
14 Hb_000184_030 0.1794104152 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_114861_010 0.1838060922 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
16 Hb_005588_110 0.1881586876 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
17 Hb_001792_030 0.1886369045 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
18 Hb_000890_110 0.1899165536 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
19 Hb_000699_080 0.1927521167 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
20 Hb_001889_010 0.1951345591 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_520 Hb_000062_520 Hb_003106_170 Hb_003106_170 Hb_000062_520--Hb_003106_170 Hb_001484_080 Hb_001484_080 Hb_000062_520--Hb_001484_080 Hb_000667_140 Hb_000667_140 Hb_000062_520--Hb_000667_140 Hb_007044_250 Hb_007044_250 Hb_000062_520--Hb_007044_250 Hb_002304_180 Hb_002304_180 Hb_000062_520--Hb_002304_180 Hb_000977_270 Hb_000977_270 Hb_000062_520--Hb_000977_270 Hb_003106_170--Hb_000977_270 Hb_003106_170--Hb_007044_250 Hb_003106_170--Hb_001484_080 Hb_003106_170--Hb_002304_180 Hb_003106_170--Hb_000667_140 Hb_001484_080--Hb_007044_250 Hb_001484_080--Hb_000977_270 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_000667_140--Hb_002304_180 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_003494_030 Hb_003494_030 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070 Hb_007044_250--Hb_000977_270 Hb_007044_250--Hb_003752_060 Hb_007044_250--Hb_002304_180 Hb_036790_120 Hb_036790_120 Hb_007044_250--Hb_036790_120 Hb_002304_180--Hb_003494_030 Hb_002304_180--Hb_000977_270 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_003752_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.912562 0.345576 5.60166 1.98174 0.241562 2.78973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47026 3.63433 0.974613 1.16412 24.6279

CAGE analysis