Hb_000062_530

Information

Type -
Description -
Location Contig62: 371375-373991
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17770g
description POPTRDRAFT_419176; integral membrane family protein
nr
ID XP_011041535.1
description PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
swissprot
ID Q9S845
description GDP-mannose transporter GONST3 OS=Arabidopsis thaliana GN=GONST3 PE=2 SV=1
trembl
ID B9HL88
description Integral membrane family protein OS=Populus trichocarpa GN=POPTR_0008s17770g PE=4 SV=2
Gene Ontology
ID GO:0005794
description gdp-mannose transporter gonst3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_530 0.0 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
2 Hb_003710_020 0.097988424 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
3 Hb_001545_130 0.1006071585 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_004109_050 0.1127120644 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
5 Hb_000152_710 0.1144591797 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
6 Hb_019280_020 0.1166915932 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
7 Hb_012362_030 0.1214754292 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
8 Hb_018845_010 0.1227631526 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
9 Hb_034507_060 0.1233396336 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
10 Hb_000735_080 0.1239681166 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
11 Hb_021576_070 0.125611813 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
12 Hb_007537_030 0.1262508463 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
13 Hb_004223_140 0.1319860797 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_016734_010 0.1324836105 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
15 Hb_003683_130 0.1325181295 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
16 Hb_147245_010 0.1327271849 - - casein kinase, putative [Ricinus communis]
17 Hb_004218_130 0.1335364166 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
18 Hb_029510_100 0.1361342297 - - scab resistance family protein [Populus trichocarpa]
19 Hb_000009_060 0.1368491833 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
20 Hb_000928_120 0.1383423903 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000062_530 Hb_000062_530 Hb_003710_020 Hb_003710_020 Hb_000062_530--Hb_003710_020 Hb_001545_130 Hb_001545_130 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_000062_530--Hb_000152_710 Hb_019280_020 Hb_019280_020 Hb_000062_530--Hb_019280_020 Hb_012362_030 Hb_012362_030 Hb_000062_530--Hb_012362_030 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_080477_080 Hb_080477_080 Hb_003710_020--Hb_080477_080 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_003710_020--Hb_001545_130 Hb_004522_030 Hb_004522_030 Hb_003710_020--Hb_004522_030 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_021576_070 Hb_021576_070 Hb_004109_050--Hb_021576_070 Hb_004109_050--Hb_000152_710 Hb_001754_020 Hb_001754_020 Hb_004109_050--Hb_001754_020 Hb_000570_020 Hb_000570_020 Hb_004109_050--Hb_000570_020 Hb_000395_110 Hb_000395_110 Hb_004109_050--Hb_000395_110 Hb_000152_710--Hb_021576_070 Hb_007537_030 Hb_007537_030 Hb_000152_710--Hb_007537_030 Hb_000152_710--Hb_001545_130 Hb_000152_710--Hb_019280_020 Hb_000494_030 Hb_000494_030 Hb_000152_710--Hb_000494_030 Hb_019280_020--Hb_012362_030 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_029510_100 Hb_029510_100 Hb_019280_020--Hb_029510_100 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_019280_020--Hb_004525_040 Hb_000062_090 Hb_000062_090 Hb_012362_030--Hb_000062_090 Hb_012362_030--Hb_029510_100 Hb_012362_030--Hb_147245_010 Hb_000008_190 Hb_000008_190 Hb_012362_030--Hb_000008_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48928 3.57654 4.66841 11.0535 0.498343 1.33001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.810588 1.12235 2.53676 5.05246 3.1974

CAGE analysis