Hb_000062_540

Information

Type -
Description -
Location Contig62: 377349-384436
Sequence    

Annotation

kegg
ID rcu:RCOM_1080950
description hypothetical protein
nr
ID XP_002514952.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_540 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002289_060 0.0730800439 - - conserved hypothetical protein [Ricinus communis]
3 Hb_043792_040 0.0731578363 - - hypothetical protein, partial [Rosa rugosa]
4 Hb_001936_130 0.0774351296 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
5 Hb_000352_120 0.0839992683 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
6 Hb_004129_140 0.090320112 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
7 Hb_019181_040 0.0910017968 - - component of oligomeric golgi complex, putative [Ricinus communis]
8 Hb_001269_330 0.0914752885 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
9 Hb_000359_310 0.0977483359 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
10 Hb_003529_030 0.0990351227 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
11 Hb_027380_220 0.0997335572 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
12 Hb_002304_040 0.1011904534 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
13 Hb_000256_150 0.1014876702 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
14 Hb_003994_280 0.1019253106 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
15 Hb_003025_100 0.1021396167 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
16 Hb_001004_070 0.1023038399 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000370_020 0.1045896599 - - conserved hypothetical protein [Ricinus communis]
18 Hb_091296_010 0.1079777863 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_005218_020 0.1082613287 - - Uncharacterized protein isoform 3 [Theobroma cacao]
20 Hb_009328_020 0.1086470799 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000062_540 Hb_000062_540 Hb_002289_060 Hb_002289_060 Hb_000062_540--Hb_002289_060 Hb_043792_040 Hb_043792_040 Hb_000062_540--Hb_043792_040 Hb_001936_130 Hb_001936_130 Hb_000062_540--Hb_001936_130 Hb_000352_120 Hb_000352_120 Hb_000062_540--Hb_000352_120 Hb_004129_140 Hb_004129_140 Hb_000062_540--Hb_004129_140 Hb_019181_040 Hb_019181_040 Hb_000062_540--Hb_019181_040 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_007416_210 Hb_007416_210 Hb_043792_040--Hb_007416_210 Hb_043792_040--Hb_001936_130 Hb_000409_030 Hb_000409_030 Hb_043792_040--Hb_000409_030 Hb_043792_040--Hb_002289_060 Hb_043792_040--Hb_019181_040 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_000352_120--Hb_001004_070 Hb_000352_120--Hb_001936_130 Hb_003206_090 Hb_003206_090 Hb_000352_120--Hb_003206_090 Hb_001269_330 Hb_001269_330 Hb_000352_120--Hb_001269_330 Hb_000352_120--Hb_027380_220 Hb_002304_040 Hb_002304_040 Hb_004129_140--Hb_002304_040 Hb_003529_030 Hb_003529_030 Hb_004129_140--Hb_003529_030 Hb_000300_630 Hb_000300_630 Hb_004129_140--Hb_000300_630 Hb_009661_030 Hb_009661_030 Hb_004129_140--Hb_009661_030 Hb_005504_050 Hb_005504_050 Hb_004129_140--Hb_005504_050 Hb_000046_500 Hb_000046_500 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_019181_040--Hb_000317_040 Hb_004754_050 Hb_004754_050 Hb_019181_040--Hb_004754_050 Hb_000703_190 Hb_000703_190 Hb_019181_040--Hb_000703_190 Hb_019181_040--Hb_001269_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8216 1.64929 2.62358 6.06207 2.57997 3.05919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61587 1.85082 4.1841 2.08042 4.30424

CAGE analysis