Hb_000062_550

Information

Type -
Description -
Location Contig62: 386614-390966
Sequence    

Annotation

kegg
ID rcu:RCOM_1080920
description OTU domain-containing protein 6B, putative
nr
ID XP_012085651.1
description PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID A0A067JVG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_550 0.0 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
2 Hb_000300_640 0.0775364778 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
3 Hb_000005_260 0.0839404204 - - transferase, putative [Ricinus communis]
4 Hb_000802_080 0.0876650012 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
5 Hb_003376_360 0.0922583738 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
6 Hb_005064_060 0.0926834262 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001366_190 0.0939861995 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
8 Hb_000109_160 0.0944703216 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
9 Hb_029879_110 0.0954135439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
10 Hb_106724_020 0.0954806752 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
11 Hb_109092_010 0.0978174712 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000245_130 0.1017935468 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
13 Hb_002078_130 0.1019251338 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
14 Hb_000116_440 0.1037356495 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
15 Hb_011671_430 0.1047247043 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
16 Hb_000099_080 0.1059749042 - - kinesin light chain, putative [Ricinus communis]
17 Hb_000220_220 0.1067957051 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
18 Hb_004577_020 0.1068951204 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
19 Hb_000630_050 0.1069631088 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015978_060 0.1071844728 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000062_550 Hb_000062_550 Hb_000300_640 Hb_000300_640 Hb_000062_550--Hb_000300_640 Hb_000005_260 Hb_000005_260 Hb_000062_550--Hb_000005_260 Hb_000802_080 Hb_000802_080 Hb_000062_550--Hb_000802_080 Hb_003376_360 Hb_003376_360 Hb_000062_550--Hb_003376_360 Hb_005064_060 Hb_005064_060 Hb_000062_550--Hb_005064_060 Hb_001366_190 Hb_001366_190 Hb_000062_550--Hb_001366_190 Hb_000300_640--Hb_001366_190 Hb_000300_640--Hb_000802_080 Hb_002685_020 Hb_002685_020 Hb_000300_640--Hb_002685_020 Hb_000705_210 Hb_000705_210 Hb_000300_640--Hb_000705_210 Hb_000700_110 Hb_000700_110 Hb_000300_640--Hb_000700_110 Hb_001097_050 Hb_001097_050 Hb_000005_260--Hb_001097_050 Hb_029879_110 Hb_029879_110 Hb_000005_260--Hb_029879_110 Hb_109092_010 Hb_109092_010 Hb_000005_260--Hb_109092_010 Hb_002982_040 Hb_002982_040 Hb_000005_260--Hb_002982_040 Hb_000347_180 Hb_000347_180 Hb_000005_260--Hb_000347_180 Hb_001789_090 Hb_001789_090 Hb_000802_080--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000802_080--Hb_002811_360 Hb_000802_080--Hb_001366_190 Hb_001663_030 Hb_001663_030 Hb_000802_080--Hb_001663_030 Hb_001301_200 Hb_001301_200 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_003376_360--Hb_000300_640 Hb_004218_150 Hb_004218_150 Hb_003376_360--Hb_004218_150 Hb_000031_060 Hb_000031_060 Hb_003376_360--Hb_000031_060 Hb_000127_130 Hb_000127_130 Hb_003376_360--Hb_000127_130 Hb_006400_040 Hb_006400_040 Hb_003376_360--Hb_006400_040 Hb_011218_040 Hb_011218_040 Hb_005064_060--Hb_011218_040 Hb_004577_020 Hb_004577_020 Hb_005064_060--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_005064_060--Hb_010417_080 Hb_000260_270 Hb_000260_270 Hb_005064_060--Hb_000260_270 Hb_035398_020 Hb_035398_020 Hb_005064_060--Hb_035398_020 Hb_017224_030 Hb_017224_030 Hb_005064_060--Hb_017224_030 Hb_000398_180 Hb_000398_180 Hb_001366_190--Hb_000398_180 Hb_007508_070 Hb_007508_070 Hb_001366_190--Hb_007508_070 Hb_028872_140 Hb_028872_140 Hb_001366_190--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_001366_190--Hb_001454_210 Hb_005305_080 Hb_005305_080 Hb_001366_190--Hb_005305_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93153 5.08135 1.02615 5.31313 6.84298 6.62206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37485 6.54427 4.88063 3.82471 2.84062

CAGE analysis