Hb_000062_640

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig62: 434759-435896
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24540g
description POPTRDRAFT_839326; hypothetical protein
nr
ID XP_011000263.1
description PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
swissprot
ID Q9M2U1
description Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2
trembl
ID B9GJP7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24540g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51489: 434633-435861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_640 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
2 Hb_000028_340 0.1232686216 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
3 Hb_005054_170 0.1320307918 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
4 Hb_003470_050 0.1459705359 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001446_060 0.1768663682 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_002289_150 0.1784191512 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
7 Hb_005489_150 0.1793344099 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
8 Hb_000207_290 0.1857001796 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
9 Hb_000056_280 0.1883697064 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_007897_030 0.1888961759 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
11 Hb_031089_050 0.1890855536 - - kinase, putative [Ricinus communis]
12 Hb_006469_070 0.1911697075 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
13 Hb_005016_020 0.1919645794 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
14 Hb_007027_010 0.1921038887 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
15 Hb_001699_170 0.1926897115 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000649_120 0.193541806 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_001817_120 0.1947493167 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
18 Hb_004724_330 0.1950005522 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000735_140 0.1966278267 - - 3-glucanase family protein [Populus trichocarpa]
20 Hb_143766_030 0.1972810397 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000062_640 Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_000062_640--Hb_000028_340 Hb_005054_170 Hb_005054_170 Hb_000062_640--Hb_005054_170 Hb_003470_050 Hb_003470_050 Hb_000062_640--Hb_003470_050 Hb_001446_060 Hb_001446_060 Hb_000062_640--Hb_001446_060 Hb_002289_150 Hb_002289_150 Hb_000062_640--Hb_002289_150 Hb_005489_150 Hb_005489_150 Hb_000062_640--Hb_005489_150 Hb_000056_280 Hb_000056_280 Hb_000028_340--Hb_000056_280 Hb_000028_340--Hb_003470_050 Hb_000649_120 Hb_000649_120 Hb_000028_340--Hb_000649_120 Hb_006469_070 Hb_006469_070 Hb_000028_340--Hb_006469_070 Hb_008468_030 Hb_008468_030 Hb_000028_340--Hb_008468_030 Hb_005054_170--Hb_000028_340 Hb_002027_170 Hb_002027_170 Hb_005054_170--Hb_002027_170 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400 Hb_003470_050--Hb_000649_120 Hb_002603_040 Hb_002603_040 Hb_003470_050--Hb_002603_040 Hb_000479_110 Hb_000479_110 Hb_003470_050--Hb_000479_110 Hb_000220_080 Hb_000220_080 Hb_003470_050--Hb_000220_080 Hb_001898_020 Hb_001898_020 Hb_001446_060--Hb_001898_020 Hb_005000_090 Hb_005000_090 Hb_001446_060--Hb_005000_090 Hb_001430_100 Hb_001430_100 Hb_001446_060--Hb_001430_100 Hb_155150_010 Hb_155150_010 Hb_001446_060--Hb_155150_010 Hb_102763_010 Hb_102763_010 Hb_001446_060--Hb_102763_010 Hb_000492_080 Hb_000492_080 Hb_001446_060--Hb_000492_080 Hb_000138_060 Hb_000138_060 Hb_002289_150--Hb_000138_060 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_011828_010 Hb_011828_010 Hb_002289_150--Hb_011828_010 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_005539_140 Hb_005539_140 Hb_005489_150--Hb_005539_140 Hb_011360_110 Hb_011360_110 Hb_005489_150--Hb_011360_110 Hb_005489_150--Hb_002289_150 Hb_028639_030 Hb_028639_030 Hb_005489_150--Hb_028639_030 Hb_000320_350 Hb_000320_350 Hb_005489_150--Hb_000320_350 Hb_005489_150--Hb_000300_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.356538 3.88051 0.948327 5.24598 0.411113 0.651347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160631 0.12633 2.08651 1.83093 2.576

CAGE analysis