Hb_000063_140

Information

Type -
Description -
Location Contig63: 305362-312065
Sequence    

Annotation

kegg
ID tcc:TCM_034316
description Ubiquitin-like superfamily protein isoform 1
nr
ID XP_012077245.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
swissprot
ID Q84WS8
description U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1
trembl
ID A0A067LAX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17228 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u11 u12 small nuclear ribonucleoprotein 25 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51798: 305178-311981 , PASA_asmbl_51799: 305308-311982
cDNA
(Sanger)
(ID:Location)		 007_N21.ab1: 305178-310824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000063_140 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
2 Hb_000175_460 0.080136447 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_010172_050 0.0803687252 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
4 Hb_085863_030 0.0836961393 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
5 Hb_003862_050 0.0837732046 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
6 Hb_005348_140 0.0875346329 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
7 Hb_001617_050 0.0880889923 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
8 Hb_002105_040 0.0891627025 - - -
9 Hb_008725_260 0.0896953043 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_016901_010 0.090913797 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_007317_200 0.0909437573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002518_140 0.0955124016 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
13 Hb_000307_030 0.0959239933 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
14 Hb_000086_400 0.0974674231 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_000008_470 0.098879618 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
16 Hb_012325_020 0.0992615618 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_000039_160 0.0995846633 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
18 Hb_000092_010 0.1005705914 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
19 Hb_000510_320 0.1008525365 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
20 Hb_000123_120 0.1027242293 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000063_140 Hb_000063_140 Hb_000175_460 Hb_000175_460 Hb_000063_140--Hb_000175_460 Hb_010172_050 Hb_010172_050 Hb_000063_140--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_000063_140--Hb_085863_030 Hb_003862_050 Hb_003862_050 Hb_000063_140--Hb_003862_050 Hb_005348_140 Hb_005348_140 Hb_000063_140--Hb_005348_140 Hb_001617_050 Hb_001617_050 Hb_000063_140--Hb_001617_050 Hb_000175_460--Hb_003862_050 Hb_002105_040 Hb_002105_040 Hb_000175_460--Hb_002105_040 Hb_000510_320 Hb_000510_320 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_085863_030--Hb_008725_260 Hb_085863_030--Hb_016901_010 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_005348_140--Hb_001617_050 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_005348_140--Hb_000175_460 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_000646_050 Hb_000646_050 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001617_050--Hb_001226_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0824 13.0511 11.5959 9.93439 15.4938 14.8413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3889 25.5788 37.9922 11.5685 9.0685

CAGE analysis