Hb_000066_030

Information

Type -
Description -
Location Contig66: 17820-25359
Sequence    

Annotation

kegg
ID rcu:RCOM_0692440
description hypothetical protein
nr
ID XP_012084527.1
description PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S841
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0692440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52911: 17988-25104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_030 0.0 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
2 Hb_003998_040 0.0487381754 - - organic anion transporter, putative [Ricinus communis]
3 Hb_005218_020 0.056813289 - - Uncharacterized protein isoform 3 [Theobroma cacao]
4 Hb_000197_020 0.0656518883 - - PREDICTED: protein RER1A [Jatropha curcas]
5 Hb_007765_040 0.0757588587 - - Cytosolic enolase isoform 3 [Theobroma cacao]
6 Hb_000371_090 0.0835227495 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
7 Hb_011214_160 0.0864571064 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
8 Hb_010407_140 0.0879706231 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
9 Hb_004055_120 0.0948016102 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
10 Hb_000656_160 0.0954226473 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
11 Hb_007894_010 0.098658613 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
12 Hb_001507_120 0.1010179023 - - transcription factor, putative [Ricinus communis]
13 Hb_001633_080 0.1031307727 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
14 Hb_000395_280 0.1041248127 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
15 Hb_005701_120 0.1044506813 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
16 Hb_001957_010 0.105119615 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
17 Hb_000390_050 0.1053578618 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
18 Hb_003777_200 0.1063621961 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
19 Hb_000399_060 0.1073156797 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
20 Hb_000917_130 0.1075645014 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]

Gene co-expression network

sample Hb_000066_030 Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000066_030--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000066_030--Hb_005218_020 Hb_000197_020 Hb_000197_020 Hb_000066_030--Hb_000197_020 Hb_007765_040 Hb_007765_040 Hb_000066_030--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_000066_030--Hb_000371_090 Hb_011214_160 Hb_011214_160 Hb_000066_030--Hb_011214_160 Hb_003998_040--Hb_005218_020 Hb_003998_040--Hb_011214_160 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_003998_040--Hb_000371_090 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_000197_020--Hb_003998_040 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_000197_020--Hb_011214_160 Hb_000390_050 Hb_000390_050 Hb_007765_040--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007765_040--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_007765_040--Hb_007416_210 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60657 3.28957 10.9712 21.2265 5.56136 8.51985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71438 4.47094 8.21289 8.52927 9.66162

CAGE analysis