Hb_000066_150

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig66: 229005-234635
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52921: 231863-232145 , PASA_asmbl_52924: 233179-233483 , PASA_asmbl_52925: 233497-235501 , PASA_asmbl_52926: 233497-244158 , PASA_asmbl_52927: 233497-235683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_150 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_012055_110 0.0500914925 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
3 Hb_002007_110 0.0551600263 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
4 Hb_010315_020 0.0563795075 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
5 Hb_000358_220 0.0595570212 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
6 Hb_000172_340 0.064982908 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
7 Hb_004032_200 0.0671658367 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
8 Hb_001904_030 0.0682218965 - - PREDICTED: importin-5 [Jatropha curcas]
9 Hb_000358_100 0.0686678845 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
10 Hb_000059_230 0.0693814317 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
11 Hb_123531_010 0.0694795778 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
12 Hb_133702_020 0.0708573836 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_003805_040 0.0716095128 - - Sacsin [Glycine soja]
14 Hb_007245_020 0.0724000616 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
15 Hb_003939_060 0.0741309561 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001935_160 0.0747784261 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
17 Hb_004429_010 0.0748712896 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_000331_580 0.0752309696 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
19 Hb_005215_010 0.0753486221 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
20 Hb_000003_100 0.0759615902 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000066_150 Hb_000066_150 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_012055_110--Hb_002007_110 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_012055_040 Hb_012055_040 Hb_004032_200--Hb_012055_040 Hb_000059_230 Hb_000059_230 Hb_004032_200--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_004032_200--Hb_003805_040 Hb_001478_040 Hb_001478_040 Hb_004032_200--Hb_001478_040 Hb_006839_010 Hb_006839_010 Hb_004032_200--Hb_006839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.814908 1.84021 1.23689 1.614 1.03198 1.35925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.496701 0.492525 0.691363 1.31245 1.82807

CAGE analysis