Hb_000067_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig67: 23961-27691
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09900g
description hypothetical protein
nr
ID XP_012071378.1
description PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID U5FEX7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000067_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
2 Hb_039305_010 0.1428745866 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
3 Hb_000270_150 0.1794535859 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000736_010 0.1956961969 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
5 Hb_000979_050 0.2014650042 - - -
6 Hb_003773_030 0.2038877473 - - -
7 Hb_008092_140 0.2049912426 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
8 Hb_159085_010 0.2126346793 - - -
9 Hb_001379_130 0.2191046047 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
10 Hb_148262_020 0.2192273918 - - -
11 Hb_000003_770 0.2281413648 - - -
12 Hb_009467_030 0.2310532683 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
13 Hb_001504_320 0.2353705347 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
14 Hb_039548_010 0.2376329945 - - hypothetical protein RCOM_1685970 [Ricinus communis]
15 Hb_000008_260 0.2377148715 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002245_040 0.2460029883 - - thioredoxin h [Hevea brasiliensis]
17 Hb_001257_020 0.2475421421 - - -
18 Hb_017436_010 0.247669913 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_004917_050 0.2531961557 - - -
20 Hb_001007_050 0.2551044156 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_000067_020 Hb_000067_020 Hb_039305_010 Hb_039305_010 Hb_000067_020--Hb_039305_010 Hb_000270_150 Hb_000270_150 Hb_000067_020--Hb_000270_150 Hb_000736_010 Hb_000736_010 Hb_000067_020--Hb_000736_010 Hb_000979_050 Hb_000979_050 Hb_000067_020--Hb_000979_050 Hb_003773_030 Hb_003773_030 Hb_000067_020--Hb_003773_030 Hb_008092_140 Hb_008092_140 Hb_000067_020--Hb_008092_140 Hb_039305_010--Hb_000979_050 Hb_039305_010--Hb_000736_010 Hb_039305_010--Hb_008092_140 Hb_039305_010--Hb_003773_030 Hb_159085_010 Hb_159085_010 Hb_039305_010--Hb_159085_010 Hb_148262_020 Hb_148262_020 Hb_000270_150--Hb_148262_020 Hb_007913_040 Hb_007913_040 Hb_000270_150--Hb_007913_040 Hb_002245_040 Hb_002245_040 Hb_000270_150--Hb_002245_040 Hb_001257_020 Hb_001257_020 Hb_000270_150--Hb_001257_020 Hb_000270_150--Hb_000736_010 Hb_000736_010--Hb_148262_020 Hb_000736_010--Hb_159085_010 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020 Hb_000979_050--Hb_008092_140 Hb_004917_050 Hb_004917_050 Hb_000979_050--Hb_004917_050 Hb_009467_030 Hb_009467_030 Hb_000979_050--Hb_009467_030 Hb_001386_080 Hb_001386_080 Hb_000979_050--Hb_001386_080 Hb_007713_010 Hb_007713_010 Hb_003773_030--Hb_007713_010 Hb_003773_030--Hb_159085_010 Hb_001504_320 Hb_001504_320 Hb_003773_030--Hb_001504_320 Hb_003773_030--Hb_000979_050 Hb_008092_140--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_008092_140--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_008092_140--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_008092_140--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_008092_140--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_008092_140--Hb_000111_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215987 0 0 0 0.303324 0.352524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75038 1.89351 0.073123 0 0.0814764

CAGE analysis