Hb_000068_030

Information

Type -
Description -
Location Contig68: 114096-115642
Sequence    

Annotation

kegg
ID pda:103699194
description uncharacterized LOC103699194
nr
ID XP_012075950.1
description PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NVL9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_05300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000068_030 0.0 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
2 Hb_005072_010 0.0086909402 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
3 Hb_001959_150 0.0713188794 - - -
4 Hb_000350_080 0.1063572469 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_007808_020 0.1531515241 - - -
6 Hb_080653_010 0.1830720959 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000249_120 0.2004154857 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
8 Hb_003786_090 0.2415740381 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
9 Hb_001080_010 0.2475184214 - - -
10 Hb_008505_020 0.2537619443 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_033835_020 0.2537861167 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001741_130 0.2540304227 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
13 Hb_163268_010 0.2540385966 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
14 Hb_005531_010 0.2540669726 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
15 Hb_002240_040 0.2567823466 - - -
16 Hb_000756_020 0.2584530934 - - BnaA05g19440D [Brassica napus]
17 Hb_000948_100 0.2757788047 - - -
18 Hb_008790_050 0.2812340206 - - conserved hypothetical protein [Ricinus communis]
19 Hb_039229_010 0.2813953396 - - -
20 Hb_167711_040 0.2905173789 - - PREDICTED: cucumisin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000068_030 Hb_000068_030 Hb_005072_010 Hb_005072_010 Hb_000068_030--Hb_005072_010 Hb_001959_150 Hb_001959_150 Hb_000068_030--Hb_001959_150 Hb_000350_080 Hb_000350_080 Hb_000068_030--Hb_000350_080 Hb_007808_020 Hb_007808_020 Hb_000068_030--Hb_007808_020 Hb_080653_010 Hb_080653_010 Hb_000068_030--Hb_080653_010 Hb_000249_120 Hb_000249_120 Hb_000068_030--Hb_000249_120 Hb_005072_010--Hb_001959_150 Hb_005072_010--Hb_000350_080 Hb_005072_010--Hb_007808_020 Hb_005072_010--Hb_080653_010 Hb_005072_010--Hb_000249_120 Hb_001959_150--Hb_000350_080 Hb_001959_150--Hb_007808_020 Hb_001959_150--Hb_080653_010 Hb_001959_150--Hb_000249_120 Hb_000350_080--Hb_007808_020 Hb_000350_080--Hb_080653_010 Hb_001080_010 Hb_001080_010 Hb_000350_080--Hb_001080_010 Hb_131060_010 Hb_131060_010 Hb_007808_020--Hb_131060_010 Hb_007808_020--Hb_080653_010 Hb_000084_040 Hb_000084_040 Hb_080653_010--Hb_000084_040 Hb_167711_040 Hb_167711_040 Hb_000249_120--Hb_167711_040 Hb_000756_020 Hb_000756_020 Hb_000249_120--Hb_000756_020 Hb_003786_090 Hb_003786_090 Hb_000249_120--Hb_003786_090 Hb_163268_010 Hb_163268_010 Hb_000249_120--Hb_163268_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0323976 0.0602291 0.0129812 0

CAGE analysis