Hb_000069_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig69: 65244-66670
Sequence    

Annotation

kegg
ID tcc:TCM_005112
description Myb domain protein 7, putative
nr
ID XP_011023154.1
description PREDICTED: myb-related protein 308-like [Populus euphratica]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A061DUF4
description Myb domain protein 7, putative OS=Theobroma cacao GN=TCM_005112 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_050 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
2 Hb_000836_400 0.0917526979 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
3 Hb_000631_130 0.1278107965 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
4 Hb_000038_090 0.1299667022 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
5 Hb_007044_070 0.1316458973 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
6 Hb_010697_030 0.1328679838 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
7 Hb_008775_050 0.1424322521 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
8 Hb_001936_030 0.1441458083 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
9 Hb_015146_010 0.1449712336 - - -
10 Hb_000772_070 0.1498362666 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
11 Hb_005563_020 0.150009277 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
12 Hb_012136_010 0.1509285004 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_005066_060 0.1509987723 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
14 Hb_000933_200 0.151063114 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
15 Hb_123560_010 0.1533062736 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
16 Hb_006533_010 0.1545065654 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
17 Hb_003141_020 0.1568641602 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
18 Hb_000352_080 0.1572949458 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
19 Hb_078903_010 0.1581861729 - - Osmotin precursor, putative [Ricinus communis]
20 Hb_005614_040 0.1585855542 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000069_050 Hb_000069_050 Hb_000836_400 Hb_000836_400 Hb_000069_050--Hb_000836_400 Hb_000631_130 Hb_000631_130 Hb_000069_050--Hb_000631_130 Hb_000038_090 Hb_000038_090 Hb_000069_050--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_000069_050--Hb_007044_070 Hb_010697_030 Hb_010697_030 Hb_000069_050--Hb_010697_030 Hb_008775_050 Hb_008775_050 Hb_000069_050--Hb_008775_050 Hb_015146_010 Hb_015146_010 Hb_000836_400--Hb_015146_010 Hb_000836_400--Hb_010697_030 Hb_005614_040 Hb_005614_040 Hb_000836_400--Hb_005614_040 Hb_007483_040 Hb_007483_040 Hb_000836_400--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_000836_400--Hb_000059_100 Hb_000631_130--Hb_000038_090 Hb_001473_100 Hb_001473_100 Hb_000631_130--Hb_001473_100 Hb_025469_040 Hb_025469_040 Hb_000631_130--Hb_025469_040 Hb_000631_130--Hb_007044_070 Hb_000933_200 Hb_000933_200 Hb_000631_130--Hb_000933_200 Hb_131864_020 Hb_131864_020 Hb_000631_130--Hb_131864_020 Hb_000038_090--Hb_001473_100 Hb_000038_090--Hb_000933_200 Hb_000327_300 Hb_000327_300 Hb_000038_090--Hb_000327_300 Hb_007747_030 Hb_007747_030 Hb_000038_090--Hb_007747_030 Hb_000407_110 Hb_000407_110 Hb_000038_090--Hb_000407_110 Hb_007044_070--Hb_025469_040 Hb_007044_070--Hb_131864_020 Hb_007044_070--Hb_001473_100 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_010697_030--Hb_007483_040 Hb_020480_050 Hb_020480_050 Hb_010697_030--Hb_020480_050 Hb_000503_040 Hb_000503_040 Hb_010697_030--Hb_000503_040 Hb_000141_070 Hb_000141_070 Hb_010697_030--Hb_000141_070 Hb_009568_010 Hb_009568_010 Hb_010697_030--Hb_009568_010 Hb_000500_160 Hb_000500_160 Hb_008775_050--Hb_000500_160 Hb_000560_050 Hb_000560_050 Hb_008775_050--Hb_000560_050 Hb_014749_010 Hb_014749_010 Hb_008775_050--Hb_014749_010 Hb_038135_010 Hb_038135_010 Hb_008775_050--Hb_038135_010 Hb_007320_050 Hb_007320_050 Hb_008775_050--Hb_007320_050 Hb_019708_010 Hb_019708_010 Hb_008775_050--Hb_019708_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.702852 5.31491 1.05599 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0940871 0.0370016 0 35.7366 0

CAGE analysis