Hb_000069_080

Information

Type -
Description -
Location Contig69: 77760-80215
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09610g
description POPTRDRAFT_774519; hypothetical protein
nr
ID XP_012083172.1
description PREDICTED: laccase-6 [Jatropha curcas]
swissprot
ID Q9ZPY2
description Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1
trembl
ID A0A067K9H0
description Laccase OS=Jatropha curcas GN=JCGZ_14235 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_080 0.0 - - PREDICTED: laccase-6 [Jatropha curcas]
2 Hb_002835_130 0.0169798432 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_010863_040 0.0235280703 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
4 Hb_002710_020 0.1306218736 - - -
5 Hb_007694_030 0.1317500933 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
6 Hb_004800_110 0.1363372671 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
7 Hb_000224_110 0.2322587596 - - -
8 Hb_003811_010 0.2366323995 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_002485_020 0.2453407279 - - metal transport family protein [Populus trichocarpa]
10 Hb_001825_050 0.2577581587 - - -
11 Hb_151497_010 0.309792536 - - -
12 Hb_004453_200 0.3245260511 - - Boron transporter, putative [Ricinus communis]
13 Hb_000982_040 0.343818971 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007101_220 0.3616040836 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
15 Hb_027846_010 0.3663932341 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_184484_010 0.366552739 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002120_020 0.3668780177 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
18 Hb_038005_010 0.3683069712 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
19 Hb_181476_010 0.3761714861 - - -
20 Hb_007945_040 0.377144595 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000069_080 Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_000069_080--Hb_002835_130 Hb_010863_040 Hb_010863_040 Hb_000069_080--Hb_010863_040 Hb_002710_020 Hb_002710_020 Hb_000069_080--Hb_002710_020 Hb_007694_030 Hb_007694_030 Hb_000069_080--Hb_007694_030 Hb_004800_110 Hb_004800_110 Hb_000069_080--Hb_004800_110 Hb_000224_110 Hb_000224_110 Hb_000069_080--Hb_000224_110 Hb_002835_130--Hb_010863_040 Hb_002835_130--Hb_007694_030 Hb_002835_130--Hb_002710_020 Hb_002835_130--Hb_004800_110 Hb_002835_130--Hb_000224_110 Hb_010863_040--Hb_002710_020 Hb_010863_040--Hb_007694_030 Hb_010863_040--Hb_004800_110 Hb_010863_040--Hb_000224_110 Hb_002710_020--Hb_004800_110 Hb_002710_020--Hb_007694_030 Hb_003811_010 Hb_003811_010 Hb_002710_020--Hb_003811_010 Hb_002485_020 Hb_002485_020 Hb_002710_020--Hb_002485_020 Hb_007694_030--Hb_004800_110 Hb_001825_050 Hb_001825_050 Hb_007694_030--Hb_001825_050 Hb_007694_030--Hb_003811_010 Hb_004800_110--Hb_003811_010 Hb_004800_110--Hb_002485_020 Hb_000224_110--Hb_001825_050 Hb_000224_110--Hb_007694_030 Hb_000224_110--Hb_002710_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00917038 0 0.0117239 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0166972 0

CAGE analysis