Hb_000069_090

Information

Type -
Description -
Location Contig69: 86483-91752
Sequence    

Annotation

kegg
ID rcu:RCOM_0881870
description beta-fructofuranosidase, putative
nr
ID AHA82516.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q67XD9
description Alkaline/neutral invertase CINV2 OS=Arabidopsis thaliana GN=CINV2 PE=1 SV=1
trembl
ID V5N411
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV5 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_090 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_000960_070 0.1846211786 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
3 Hb_001486_150 0.2373728203 - - -
4 Hb_124302_030 0.246459198 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
5 Hb_003175_020 0.2498433874 - - homeobox protein knotted-1, putative [Ricinus communis]
6 Hb_000699_190 0.2584126378 - - unknown [Populus trichocarpa]
7 Hb_025194_010 0.2734366785 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
8 Hb_006829_050 0.2746844649 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_000625_110 0.2800297657 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
10 Hb_000825_040 0.2805675558 - - catalytic, putative [Ricinus communis]
11 Hb_003893_020 0.2896185725 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
12 Hb_006026_010 0.2906329652 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
13 Hb_002701_140 0.2914684044 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
14 Hb_011120_020 0.2957764639 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
15 Hb_002546_040 0.2982392667 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
16 Hb_116635_010 0.2998853463 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_002326_080 0.3001453704 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
18 Hb_002918_150 0.3057080994 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
19 Hb_003299_010 0.306269693 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_000359_110 0.3084277991 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]

Gene co-expression network

sample Hb_000069_090 Hb_000069_090 Hb_000960_070 Hb_000960_070 Hb_000069_090--Hb_000960_070 Hb_001486_150 Hb_001486_150 Hb_000069_090--Hb_001486_150 Hb_124302_030 Hb_124302_030 Hb_000069_090--Hb_124302_030 Hb_003175_020 Hb_003175_020 Hb_000069_090--Hb_003175_020 Hb_000699_190 Hb_000699_190 Hb_000069_090--Hb_000699_190 Hb_025194_010 Hb_025194_010 Hb_000069_090--Hb_025194_010 Hb_000960_070--Hb_001486_150 Hb_001437_020 Hb_001437_020 Hb_000960_070--Hb_001437_020 Hb_000625_110 Hb_000625_110 Hb_000960_070--Hb_000625_110 Hb_000825_040 Hb_000825_040 Hb_000960_070--Hb_000825_040 Hb_006829_050 Hb_006829_050 Hb_000960_070--Hb_006829_050 Hb_010921_090 Hb_010921_090 Hb_001486_150--Hb_010921_090 Hb_000111_300 Hb_000111_300 Hb_001486_150--Hb_000111_300 Hb_001863_100 Hb_001863_100 Hb_001486_150--Hb_001863_100 Hb_133636_010 Hb_133636_010 Hb_001486_150--Hb_133636_010 Hb_002701_140 Hb_002701_140 Hb_124302_030--Hb_002701_140 Hb_124302_030--Hb_003175_020 Hb_000940_020 Hb_000940_020 Hb_124302_030--Hb_000940_020 Hb_128912_010 Hb_128912_010 Hb_124302_030--Hb_128912_010 Hb_006351_080 Hb_006351_080 Hb_124302_030--Hb_006351_080 Hb_004586_380 Hb_004586_380 Hb_124302_030--Hb_004586_380 Hb_003175_020--Hb_025194_010 Hb_141142_010 Hb_141142_010 Hb_003175_020--Hb_141142_010 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010 Hb_042553_010 Hb_042553_010 Hb_000699_190--Hb_042553_010 Hb_004611_060 Hb_004611_060 Hb_000699_190--Hb_004611_060 Hb_001131_070 Hb_001131_070 Hb_000699_190--Hb_001131_070 Hb_187697_010 Hb_187697_010 Hb_000699_190--Hb_187697_010 Hb_073096_010 Hb_073096_010 Hb_000699_190--Hb_073096_010 Hb_007137_030 Hb_007137_030 Hb_000699_190--Hb_007137_030 Hb_001269_040 Hb_001269_040 Hb_025194_010--Hb_001269_040 Hb_001338_050 Hb_001338_050 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_025194_010--Hb_141142_010 Hb_025194_010--Hb_007144_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102796 0 0.0182455 0.0078828 0.0159441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150461 0 0.0239126 0

CAGE analysis