Hb_000069_100

Information

Type -
Description -
Location Contig69: 94250-97067
Sequence    

Annotation

kegg
ID rcu:RCOM_0716680
description hypothetical protein
nr
ID XP_002523317.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBE8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54164: 94306-95280 , PASA_asmbl_54166: 96685-96906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002097_060 0.0555157481 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_006831_030 0.0645328452 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
4 Hb_000329_330 0.0650637022 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
5 Hb_001616_060 0.0666933002 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
6 Hb_000212_260 0.0709131196 - - acyl-carrier-protein [Triadica sebifera]
7 Hb_006573_220 0.0730437019 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
8 Hb_007382_150 0.0742808201 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
9 Hb_003938_180 0.0743486152 - - lesion inducing family protein [Populus trichocarpa]
10 Hb_017862_010 0.0758041093 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
11 Hb_003929_120 0.0772802444 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
12 Hb_000224_090 0.0778552773 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
13 Hb_002603_150 0.0793573337 - - PREDICTED: protein yippee-like [Jatropha curcas]
14 Hb_000567_170 0.0799541928 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
15 Hb_001687_040 0.080102876 - - actin-depolymerizing factor [Hevea brasiliensis]
16 Hb_001575_020 0.0807375136 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003053_030 0.0833280415 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
18 Hb_003376_030 0.0836368221 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
19 Hb_003376_130 0.0843685716 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
20 Hb_000272_070 0.0844949303 - - snare protein YKt [Hevea brasiliensis]

Gene co-expression network

sample Hb_000069_100 Hb_000069_100 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_003376_030 Hb_003376_030 Hb_002097_060--Hb_003376_030 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_002097_060--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_000329_330--Hb_006573_220 Hb_003376_130 Hb_003376_130 Hb_000329_330--Hb_003376_130 Hb_000329_330--Hb_148200_010 Hb_000329_330--Hb_003376_030 Hb_000329_330--Hb_002097_060 Hb_001616_060--Hb_001575_020 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_000212_260--Hb_003376_130 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_006573_220--Hb_003376_030 Hb_006573_220--Hb_007382_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1194 4.50257 6.88146 12.3141 16.482 25.8292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.3312 77.5753 59.6371 14.7106 9.15215

CAGE analysis