Hb_000069_110

Information

Type -
Description -
Location Contig69: 97002-100944
Sequence    

Annotation

kegg
ID cic:CICLE_v10019438mg
description hypothetical protein
nr
ID XP_012083175.1
description PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
swissprot
ID Q7Z494
description Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
trembl
ID A0A067K086
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54167: 97798-100888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_110 0.0 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
2 Hb_011867_010 0.0780996433 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
3 Hb_011316_040 0.0799802281 - - peptidase, putative [Ricinus communis]
4 Hb_002609_020 0.0824541919 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
5 Hb_132835_010 0.0827196261 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
6 Hb_001277_330 0.0846097609 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
7 Hb_000510_320 0.0866450478 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
8 Hb_006541_030 0.0870813819 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
9 Hb_000243_030 0.0880010593 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
10 Hb_009838_080 0.0890296964 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_000928_210 0.0893134786 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
12 Hb_003929_160 0.0895554135 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
13 Hb_004907_080 0.0906114512 - - zinc finger protein, putative [Ricinus communis]
14 Hb_009048_040 0.0909882975 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_012799_180 0.0910547215 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
16 Hb_001703_030 0.092291336 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
17 Hb_004109_090 0.0925096117 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_004324_070 0.0933542934 - - protein phosphatase 2C [Hevea brasiliensis]
19 Hb_003683_160 0.0937266517 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
20 Hb_009486_130 0.0939392559 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]

Gene co-expression network

sample Hb_000069_110 Hb_000069_110 Hb_011867_010 Hb_011867_010 Hb_000069_110--Hb_011867_010 Hb_011316_040 Hb_011316_040 Hb_000069_110--Hb_011316_040 Hb_002609_020 Hb_002609_020 Hb_000069_110--Hb_002609_020 Hb_132835_010 Hb_132835_010 Hb_000069_110--Hb_132835_010 Hb_001277_330 Hb_001277_330 Hb_000069_110--Hb_001277_330 Hb_000510_320 Hb_000510_320 Hb_000069_110--Hb_000510_320 Hb_006031_020 Hb_006031_020 Hb_011867_010--Hb_006031_020 Hb_011867_010--Hb_002609_020 Hb_001703_030 Hb_001703_030 Hb_011867_010--Hb_001703_030 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_000479_010 Hb_000479_010 Hb_011867_010--Hb_000479_010 Hb_011316_040--Hb_001277_330 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_004735_040 Hb_004735_040 Hb_002609_020--Hb_004735_040 Hb_001821_010 Hb_001821_010 Hb_002609_020--Hb_001821_010 Hb_009838_080 Hb_009838_080 Hb_002609_020--Hb_009838_080 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_004440_090 Hb_004440_090 Hb_132835_010--Hb_004440_090 Hb_132835_010--Hb_001703_030 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7939 7.67323 12.1418 12.7148 26.5948 22.7891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2623 28.6378 32.8666 7.02064 13.3149

CAGE analysis