Hb_000069_120

Information

Type -
Description -
Location Contig69: 104151-118157
Sequence    

Annotation

kegg
ID rcu:RCOM_0716810
description nucleotide binding protein, putative
nr
ID XP_011023156.1
description PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
swissprot
ID Q6PNC0
description DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1
trembl
ID B9SBF1
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0716810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54168: 104484-105169 , PASA_asmbl_54171: 107989-109954 , PASA_asmbl_54172: 110446-110948 , PASA_asmbl_54173: 110446-110962 , PASA_asmbl_54174: 110964-111561 , PASA_asmbl_54175: 111650-113805 , PASA_asmbl_54176: 113831-117971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_120 0.0 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
2 Hb_000230_260 0.0526535266 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
3 Hb_071130_010 0.0541068693 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
4 Hb_041327_010 0.060001994 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
5 Hb_017358_040 0.0607136993 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
6 Hb_002639_080 0.064771933 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
7 Hb_000537_050 0.0649355013 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
8 Hb_012286_040 0.0675596785 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
9 Hb_005663_110 0.0686264452 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
10 Hb_009296_040 0.068803027 - - hypothetical protein L484_007435 [Morus notabilis]
11 Hb_000614_240 0.0701370527 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
12 Hb_085781_020 0.0702786436 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
13 Hb_003913_070 0.0714248501 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
14 Hb_000261_480 0.0721731951 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
15 Hb_000340_490 0.07246564 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
16 Hb_011016_050 0.0738492741 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
17 Hb_000592_030 0.0741439845 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
18 Hb_002477_090 0.0761517069 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
19 Hb_039946_050 0.0779612927 - - catalytic, putative [Ricinus communis]
20 Hb_010142_020 0.0794049236 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000069_120 Hb_000069_120 Hb_000230_260 Hb_000230_260 Hb_000069_120--Hb_000230_260 Hb_071130_010 Hb_071130_010 Hb_000069_120--Hb_071130_010 Hb_041327_010 Hb_041327_010 Hb_000069_120--Hb_041327_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_002639_080 Hb_002639_080 Hb_000069_120--Hb_002639_080 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050 Hb_000230_260--Hb_071130_010 Hb_000230_260--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_085781_020 Hb_085781_020 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000537_050 Hb_001761_130 Hb_001761_130 Hb_017358_040--Hb_001761_130 Hb_017358_040--Hb_071130_010 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_017358_040--Hb_003060_060 Hb_002639_080--Hb_001188_020 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8825 5.48568 2.75642 5.74635 4.25966 5.85446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88732 3.45257 4.0682 8.67528 5.44052

CAGE analysis