Hb_000069_140

Information

Type -
Description -
Location Contig69: 125027-127342
Sequence    

Annotation

kegg
ID egr:104443353
description uncharacterized LOC104443353
nr
ID XP_012083192.1
description PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A068UM29
description Coffea canephora DH200=94 genomic scaffold, scaffold_35 OS=Coffea canephora GN=GSCOC_T00027698001 PE=4 SV=1
Gene Ontology
ID GO:0005739
description fiber protein fb11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54181: 125100-127458
cDNA
(Sanger)
(ID:Location)		 021_J19.ab1: 125101-127438 , 045_F23.ab1: 125100-127458 , 045_O21.ab1: 125100-127458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_140 0.0 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
2 Hb_000260_200 0.0814945854 - - -
3 Hb_002391_220 0.0832230251 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
4 Hb_012539_020 0.0840215032 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
5 Hb_000820_130 0.091054351 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
6 Hb_001424_020 0.0926446027 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
7 Hb_000270_720 0.0926882842 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
8 Hb_003777_210 0.100380602 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_000163_210 0.1005429489 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
10 Hb_000780_210 0.1024276749 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
11 Hb_000389_080 0.1024450578 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_002316_120 0.1027353031 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_000599_280 0.1039394692 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
14 Hb_000366_110 0.1040636504 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
15 Hb_001780_050 0.104621314 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
16 Hb_000193_200 0.1054528982 - - rotamase, putative [Ricinus communis]
17 Hb_000365_080 0.105487171 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
18 Hb_003053_030 0.1055799917 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_001155_040 0.1058975683 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
20 Hb_011377_020 0.1066188174 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_000069_140 Hb_000069_140 Hb_000260_200 Hb_000260_200 Hb_000069_140--Hb_000260_200 Hb_002391_220 Hb_002391_220 Hb_000069_140--Hb_002391_220 Hb_012539_020 Hb_012539_020 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_001424_020 Hb_001424_020 Hb_000069_140--Hb_001424_020 Hb_000270_720 Hb_000270_720 Hb_000069_140--Hb_000270_720 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_000260_200--Hb_002391_220 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_000260_200--Hb_012539_020 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_005211_190 Hb_005211_190 Hb_001424_020--Hb_005211_190 Hb_000365_080 Hb_000365_080 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090 Hb_000270_720--Hb_000789_110 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000270_720--Hb_000599_280 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.6315 5.72082 32.1845 70.1038 59.5868 76.2758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
302.391 376.905 137.362 75.986 72.6589

CAGE analysis