Hb_000069_230

Information

Type transcription factor
Description TF Family: bHLH
Location Contig69: 280801-290131
Sequence    

Annotation

kegg
ID rcu:RCOM_0717730
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012083197.1
description PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
swissprot
ID Q9LNJ5
description Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1
trembl
ID A0A067JX67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14248 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor bhlh13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54192: 280365-280773 , PASA_asmbl_54193: 280844-290192 , PASA_asmbl_54194: 280844-290192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_230 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
2 Hb_003097_100 0.0855002878 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
3 Hb_003078_050 0.111605351 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
4 Hb_028207_040 0.1213282224 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
5 Hb_000634_070 0.1264171816 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
6 Hb_004597_010 0.1373038772 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
7 Hb_001525_010 0.1383823543 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
8 Hb_000483_040 0.1405704586 - - Cell division protein ftsH, putative [Ricinus communis]
9 Hb_000465_080 0.1407565913 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
10 Hb_003506_070 0.1437414271 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
11 Hb_001950_030 0.1474609285 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
12 Hb_012760_010 0.1494013505 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
13 Hb_022693_050 0.1533717853 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_001268_390 0.1558399507 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
15 Hb_003120_050 0.1574370339 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
16 Hb_010921_030 0.1582048284 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
17 Hb_000953_050 0.1696783131 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
18 Hb_012226_010 0.1705685904 - - PREDICTED: protein DGCR14 [Jatropha curcas]
19 Hb_003125_030 0.1711864289 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000179_240 0.1725068818 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000069_230 Hb_000069_230 Hb_003097_100 Hb_003097_100 Hb_000069_230--Hb_003097_100 Hb_003078_050 Hb_003078_050 Hb_000069_230--Hb_003078_050 Hb_028207_040 Hb_028207_040 Hb_000069_230--Hb_028207_040 Hb_000634_070 Hb_000634_070 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_001525_010 Hb_001525_010 Hb_000069_230--Hb_001525_010 Hb_003097_100--Hb_000634_070 Hb_003097_100--Hb_003078_050 Hb_003097_100--Hb_028207_040 Hb_022693_050 Hb_022693_050 Hb_003097_100--Hb_022693_050 Hb_003728_040 Hb_003728_040 Hb_003097_100--Hb_003728_040 Hb_003078_050--Hb_000634_070 Hb_003078_050--Hb_028207_040 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_000953_050 Hb_000953_050 Hb_028207_040--Hb_000953_050 Hb_028207_040--Hb_001525_010 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000634_070--Hb_000953_050 Hb_000634_070--Hb_001205_030 Hb_000634_070--Hb_028207_040 Hb_155396_010 Hb_155396_010 Hb_004597_010--Hb_155396_010 Hb_009771_100 Hb_009771_100 Hb_004597_010--Hb_009771_100 Hb_003411_110 Hb_003411_110 Hb_004597_010--Hb_003411_110 Hb_000025_330 Hb_000025_330 Hb_004597_010--Hb_000025_330 Hb_000084_030 Hb_000084_030 Hb_004597_010--Hb_000084_030 Hb_005541_010 Hb_005541_010 Hb_004597_010--Hb_005541_010 Hb_003506_070 Hb_003506_070 Hb_001525_010--Hb_003506_070 Hb_003125_030 Hb_003125_030 Hb_001525_010--Hb_003125_030 Hb_001525_010--Hb_000953_050 Hb_000540_110 Hb_000540_110 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6356 234.175 48.0575 38.0933 47.2248 48.2753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.9521 37.6699 75.6284 13.6776 14.8656

CAGE analysis