Hb_000069_240

Information

Type -
Description -
Location Contig69: 292674-295599
Sequence    

Annotation

kegg
ID cmo:103482966
description uncharacterized LOC103482966
nr
ID XP_012083198.1
description PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
swissprot
ID Q94A79
description Protein DEFECTIVE IN MERISTEM SILENCING 3 OS=Arabidopsis thaliana GN=DMS3 PE=1 SV=1
trembl
ID A0A0A0KN76
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139400 PE=4 SV=1
Gene Ontology
ID GO:0005694
description protein defective in meristem silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54195: 292959-293287 , PASA_asmbl_54196: 293928-295573 , PASA_asmbl_54197: 293928-295390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_240 0.0 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
2 Hb_004920_070 0.1582322948 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
3 Hb_012545_030 0.1702117281 - - Polyadenylate-binding protein RBP47C [Glycine soja]
4 Hb_003549_130 0.1721206217 - - neutral/alkaline invertase [Manihot esculenta]
5 Hb_008173_060 0.1725272239 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
6 Hb_000510_230 0.1837919081 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
7 Hb_003147_070 0.1922560085 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
8 Hb_002217_190 0.1981682931 - - invertase [Hevea brasiliensis]
9 Hb_004449_140 0.1983730032 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_001214_190 0.198985753 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
11 Hb_143813_020 0.2036301612 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
12 Hb_004193_010 0.2045514764 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
13 Hb_006120_150 0.204673576 - - invertase [Hevea brasiliensis]
14 Hb_001198_080 0.2105693437 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
15 Hb_005701_110 0.2127683943 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
16 Hb_000684_100 0.2147264605 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
17 Hb_002400_170 0.2148683354 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
18 Hb_000818_120 0.2181713088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000185_230 0.2188095498 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_031822_010 0.2198096867 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]

Gene co-expression network

sample Hb_000069_240 Hb_000069_240 Hb_004920_070 Hb_004920_070 Hb_000069_240--Hb_004920_070 Hb_012545_030 Hb_012545_030 Hb_000069_240--Hb_012545_030 Hb_003549_130 Hb_003549_130 Hb_000069_240--Hb_003549_130 Hb_008173_060 Hb_008173_060 Hb_000069_240--Hb_008173_060 Hb_000510_230 Hb_000510_230 Hb_000069_240--Hb_000510_230 Hb_003147_070 Hb_003147_070 Hb_000069_240--Hb_003147_070 Hb_004920_070--Hb_003147_070 Hb_004920_070--Hb_000510_230 Hb_000394_110 Hb_000394_110 Hb_004920_070--Hb_000394_110 Hb_002849_140 Hb_002849_140 Hb_004920_070--Hb_002849_140 Hb_000529_150 Hb_000529_150 Hb_004920_070--Hb_000529_150 Hb_000421_230 Hb_000421_230 Hb_012545_030--Hb_000421_230 Hb_005701_110 Hb_005701_110 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_012545_030--Hb_003147_070 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_000032_200 Hb_000032_200 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_008173_060--Hb_012545_030 Hb_000510_230--Hb_000394_110 Hb_000510_230--Hb_003147_070 Hb_000510_230--Hb_000529_150 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_003147_070--Hb_000421_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85992 14.2745 35.3969 4.1988 0.576136 0.580353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01166 6.65005 7.6642 2.991 2.41356

CAGE analysis