Hb_000069_330

Information

Type -
Description -
Location Contig69: 341699-344401
Sequence    

Annotation

kegg
ID rcu:RCOM_0718360
description protein with unknown function
nr
ID XP_002523344.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9ZPY9
description Phosphatidylinositol 4-kinase gamma 4 OS=Arabidopsis thaliana GN=PI4KG4 PE=1 SV=1
trembl
ID B9SBH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0718360 PE=4 SV=1
Gene Ontology
ID GO:0016301
description phosphatidylinositol 4-kinase gamma 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54217: 341672-344342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_330 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_003077_050 0.0886675842 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
3 Hb_000009_200 0.0992617136 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
4 Hb_007007_080 0.1023660302 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001898_130 0.1050702725 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004117_170 0.1190370024 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
7 Hb_005714_100 0.1212709639 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
8 Hb_018790_050 0.1248182837 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_003581_280 0.1260577078 - - KINASE 2B family protein [Populus trichocarpa]
10 Hb_000805_040 0.1285189143 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
11 Hb_000272_110 0.1312057218 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
12 Hb_048755_020 0.1327358223 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
13 Hb_007382_100 0.1333847108 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_000045_260 0.1350944486 - - protein with unknown function [Ricinus communis]
15 Hb_000345_500 0.1358935117 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
16 Hb_000035_050 0.1367258144 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
17 Hb_011360_090 0.1376238399 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_012787_040 0.1386135596 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
19 Hb_002875_070 0.1386839203 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
20 Hb_001246_160 0.1396047927 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_330 Hb_000069_330 Hb_003077_050 Hb_003077_050 Hb_000069_330--Hb_003077_050 Hb_000009_200 Hb_000009_200 Hb_000069_330--Hb_000009_200 Hb_007007_080 Hb_007007_080 Hb_000069_330--Hb_007007_080 Hb_001898_130 Hb_001898_130 Hb_000069_330--Hb_001898_130 Hb_004117_170 Hb_004117_170 Hb_000069_330--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000069_330--Hb_005714_100 Hb_003077_050--Hb_004117_170 Hb_000077_390 Hb_000077_390 Hb_003077_050--Hb_000077_390 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_001484_020 Hb_001484_020 Hb_003077_050--Hb_001484_020 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000035_050 Hb_000035_050 Hb_000009_200--Hb_000035_050 Hb_056196_060 Hb_056196_060 Hb_000009_200--Hb_056196_060 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_002477_120 Hb_002477_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_018790_050 Hb_018790_050 Hb_001898_130--Hb_018790_050 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_048476_040 Hb_048476_040 Hb_001898_130--Hb_048476_040 Hb_004117_170--Hb_000035_050 Hb_013358_020 Hb_013358_020 Hb_004117_170--Hb_013358_020 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_005714_100--Hb_000035_050 Hb_005714_100--Hb_008112_010 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_005714_100--Hb_056196_060 Hb_005714_100--Hb_001376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33559 69.4967 33.5182 29.5335 2.84176 5.30933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.02956 7.9507 12.2163 7.91492 13.0096

CAGE analysis