Hb_000069_360

Information

Type -
Description -
Location Contig69: 364549-367202
Sequence    

Annotation

kegg
ID rcu:RCOM_0718380
description hypothetical protein
nr
ID XP_002523346.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O32107
description Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1
trembl
ID B9SBH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0718380 PE=4 SV=1
Gene Ontology
ID GO:0005886
description acid phosphatase vanadium-dependent haloperoxidase-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54220: 364510-367035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000566_010 0.0870389671 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_000327_200 0.0870461328 - - glutathione-s-transferase omega, putative [Ricinus communis]
4 Hb_003994_080 0.0952043408 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
5 Hb_000140_060 0.1044180387 - - 50S ribosomal protein L5, putative [Ricinus communis]
6 Hb_003752_090 0.1069468508 - - chitinase, putative [Ricinus communis]
7 Hb_003020_250 0.1111352508 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
8 Hb_002759_120 0.113173041 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001021_210 0.1134343761 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_008179_030 0.1211127179 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
11 Hb_000422_080 0.1221355044 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
12 Hb_003664_030 0.1222888863 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
13 Hb_000188_060 0.1251620171 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
14 Hb_005000_080 0.1258179546 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
15 Hb_004440_070 0.1272908477 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
16 Hb_000414_080 0.1280634217 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
17 Hb_000099_170 0.130376562 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
18 Hb_000749_020 0.1305689652 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
19 Hb_004223_270 0.1306738963 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
20 Hb_010620_050 0.1309040279 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_360 Hb_000069_360 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_003994_080 Hb_003994_080 Hb_000069_360--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000069_360--Hb_000140_060 Hb_003752_090 Hb_003752_090 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250 Hb_000566_010--Hb_003994_080 Hb_021409_070 Hb_021409_070 Hb_000566_010--Hb_021409_070 Hb_002759_120 Hb_002759_120 Hb_000566_010--Hb_002759_120 Hb_000566_010--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_000566_010--Hb_005665_090 Hb_000310_060 Hb_000310_060 Hb_000327_200--Hb_000310_060 Hb_000996_080 Hb_000996_080 Hb_000327_200--Hb_000996_080 Hb_000327_200--Hb_003020_250 Hb_001587_040 Hb_001587_040 Hb_000327_200--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000327_200--Hb_000334_050 Hb_003994_080--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003752_090--Hb_003020_250 Hb_003752_090--Hb_005665_090 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003020_250--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_003020_250--Hb_007904_060 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62985 7.2441 17.325 15.1882 2.44917 1.16908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85485 5.06099 2.42641 3.37265 17.9232

CAGE analysis