Hb_000069_380

Information

Type transcription factor
Description TF Family: PHD
Location Contig69: 408561-418377
Sequence    

Annotation

kegg
ID rcu:RCOM_0718450
description trithorax, putative (EC:2.1.1.43)
nr
ID XP_012083218.1
description PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
swissprot
ID Q9M364
description Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana GN=ATX3 PE=2 SV=2
trembl
ID A0A067JX80
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_14263 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase atx3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54229: 409311-409643 , PASA_asmbl_54230: 410339-411283 , PASA_asmbl_54232: 413007-414805 , PASA_asmbl_54234: 417953-418296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_380 0.0 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
2 Hb_006059_040 0.0455037826 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
3 Hb_000708_030 0.0666834254 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
4 Hb_000699_030 0.0726038323 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
5 Hb_001225_040 0.0783949386 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
6 Hb_010368_010 0.0785390243 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
7 Hb_001699_220 0.0795118155 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
8 Hb_002232_410 0.0802995966 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
9 Hb_000331_680 0.0809813403 - - Protein bem46, putative [Ricinus communis]
10 Hb_005730_040 0.0839212232 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
11 Hb_004586_300 0.0847375316 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_000462_170 0.0850837068 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001359_050 0.0866719788 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001862_210 0.0870714656 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
15 Hb_002820_030 0.0884302659 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
16 Hb_000059_380 0.0887033969 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
17 Hb_000010_190 0.0889887877 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
18 Hb_006570_080 0.0897959709 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
19 Hb_004837_180 0.0901678262 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_005271_220 0.0902673903 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000069_380 Hb_000069_380 Hb_006059_040 Hb_006059_040 Hb_000069_380--Hb_006059_040 Hb_000708_030 Hb_000708_030 Hb_000069_380--Hb_000708_030 Hb_000699_030 Hb_000699_030 Hb_000069_380--Hb_000699_030 Hb_001225_040 Hb_001225_040 Hb_000069_380--Hb_001225_040 Hb_010368_010 Hb_010368_010 Hb_000069_380--Hb_010368_010 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_007472_070 Hb_007472_070 Hb_006059_040--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_000699_030--Hb_003680_120 Hb_004837_180 Hb_004837_180 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_001225_040--Hb_005730_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_004333_040 Hb_004333_040 Hb_001699_220--Hb_004333_040 Hb_010068_080 Hb_010068_080 Hb_001699_220--Hb_010068_080 Hb_003430_050 Hb_003430_050 Hb_001699_220--Hb_003430_050 Hb_001699_220--Hb_006059_040 Hb_000392_420 Hb_000392_420 Hb_001699_220--Hb_000392_420 Hb_007894_150 Hb_007894_150 Hb_001699_220--Hb_007894_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.94126 6.30258 5.96015 4.76631 3.23995 4.39286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.97553 5.7793 3.90258 5.21889 5.74224

CAGE analysis