Hb_000069_410

Information

Type -
Description -
Location Contig69: 427040-429731
Sequence    

Annotation

kegg
ID rcu:RCOM_0718480
description hypothetical protein
nr
ID XP_012083219.1
description PREDICTED: protein SDE2 homolog [Jatropha curcas]
swissprot
ID Q6NRI5
description Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1
trembl
ID A0A067K9K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54235: 427085-429684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_410 0.0 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
2 Hb_001821_090 0.0432589983 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
3 Hb_001575_010 0.0544392732 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003581_170 0.0633446693 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_023226_080 0.0649599217 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
6 Hb_001699_280 0.0696035411 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
7 Hb_000105_040 0.0697591613 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
8 Hb_001959_020 0.0709532845 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
9 Hb_009615_170 0.0731200588 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
10 Hb_028487_010 0.0740626245 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_004586_290 0.0747446223 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
12 Hb_005542_140 0.0748254153 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_003177_060 0.0750632224 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
14 Hb_188063_010 0.0766625369 - - hypothetical protein RCOM_1469330 [Ricinus communis]
15 Hb_005656_040 0.0768665622 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_003284_030 0.0781629826 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
17 Hb_000176_100 0.0797937205 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
18 Hb_000949_010 0.0807710389 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
19 Hb_005143_030 0.0814595306 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
20 Hb_003058_060 0.081693955 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000069_410 Hb_000069_410 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001575_010--Hb_001821_090 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_023226_080--Hb_000176_100 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_023226_080--Hb_009615_170 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_005542_140 Hb_000105_040--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7055 71.6732 18.9481 30.0701 42.9182 42.8286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1512 17.6135 25.2428 55.9583 33.3099

CAGE analysis