Hb_000069_420

Information

Type -
Description -
Location Contig69: 430070-436579
Sequence    

Annotation

kegg
ID rcu:RCOM_0718600
description Beclin-1, putative
nr
ID XP_002523358.1
description Beclin-1, putative [Ricinus communis]
swissprot
ID Q9M367
description Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2
trembl
ID B9SBI9
description Beclin-1, putative OS=Ricinus communis GN=RCOM_0718600 PE=4 SV=1
Gene Ontology
ID GO:0000407
description beclin-1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54236: 430254-436587
cDNA
(Sanger)
(ID:Location)		 025_E08.ab1: 430257-431756 , 032_F18.ab1: 430257-431706 , 039_C18.ab1: 430257-431757 , 048_I23.ab1: 430257-431742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_420 0.0 - - Beclin-1, putative [Ricinus communis]
2 Hb_004994_140 0.0575188612 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
3 Hb_003994_260 0.0579694359 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_004324_090 0.0662151066 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
5 Hb_005846_040 0.0705442694 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
6 Hb_000250_060 0.070623527 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
7 Hb_001633_210 0.0716598193 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
8 Hb_034406_030 0.0717754498 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
9 Hb_007416_320 0.0751612924 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010812_120 0.0783242018 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
11 Hb_012107_060 0.0791169569 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
12 Hb_003787_010 0.0801810504 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
13 Hb_012490_070 0.082202476 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006615_240 0.0824430423 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_000258_260 0.0832028571 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
16 Hb_003349_090 0.0832028737 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
17 Hb_001545_170 0.085401996 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_006615_020 0.0857398458 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
19 Hb_000710_060 0.0874797292 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
20 Hb_000030_030 0.0875429067 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]

Gene co-expression network

sample Hb_000069_420 Hb_000069_420 Hb_004994_140 Hb_004994_140 Hb_000069_420--Hb_004994_140 Hb_003994_260 Hb_003994_260 Hb_000069_420--Hb_003994_260 Hb_004324_090 Hb_004324_090 Hb_000069_420--Hb_004324_090 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000250_060 Hb_000250_060 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004994_140--Hb_007416_320 Hb_012107_060 Hb_012107_060 Hb_004994_140--Hb_012107_060 Hb_003376_350 Hb_003376_350 Hb_004994_140--Hb_003376_350 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_158445_010 Hb_158445_010 Hb_004324_090--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_004324_090--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_006615_240 Hb_006615_240 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_000250_060--Hb_001633_210 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1359 17.5533 11.9074 14.0688 12.5111 11.0368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4227 31.6893 24.5568 18.6597 10.3736

CAGE analysis