Hb_000069_440

Information

Type -
Description -
Location Contig69: 452339-458712
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17110g
description POPTRDRAFT_816632; hypothetical protein
nr
ID XP_012083223.1
description PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54238: 452490-458324 , PASA_asmbl_54239: 452514-458588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_440 0.0 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
2 Hb_004411_010 0.0479506778 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
3 Hb_000282_020 0.0551044989 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
4 Hb_007853_030 0.0570854868 - - structural molecule, putative [Ricinus communis]
5 Hb_023827_030 0.0610177377 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
6 Hb_000069_220 0.061417535 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
7 Hb_001266_010 0.0634909616 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
8 Hb_000608_270 0.0657435677 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007681_010 0.066613017 - - hypothetical protein RCOM_2128750 [Ricinus communis]
10 Hb_009476_030 0.0678053407 - - fatty acid desaturase [Manihot esculenta]
11 Hb_000530_040 0.0693503186 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
12 Hb_000005_060 0.0713616954 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
13 Hb_000697_030 0.0727434562 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
14 Hb_001166_010 0.0763690427 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
15 Hb_041433_010 0.0770299625 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_001975_120 0.0775399832 - - chlorophyll a/b binding protein type II [Glycine max]
17 Hb_019053_040 0.0812444354 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001424_010 0.0829267678 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_034235_010 0.0831099711 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_003038_230 0.084099305 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_440 Hb_000069_440 Hb_004411_010 Hb_004411_010 Hb_000069_440--Hb_004411_010 Hb_000282_020 Hb_000282_020 Hb_000069_440--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_000069_440--Hb_007853_030 Hb_023827_030 Hb_023827_030 Hb_000069_440--Hb_023827_030 Hb_000069_220 Hb_000069_220 Hb_000069_440--Hb_000069_220 Hb_001266_010 Hb_001266_010 Hb_000069_440--Hb_001266_010 Hb_004411_010--Hb_000069_220 Hb_000697_030 Hb_000697_030 Hb_004411_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_004411_010--Hb_016371_010 Hb_004411_010--Hb_000282_020 Hb_004411_010--Hb_007853_030 Hb_019053_040 Hb_019053_040 Hb_000282_020--Hb_019053_040 Hb_000005_060 Hb_000005_060 Hb_000282_020--Hb_000005_060 Hb_023582_010 Hb_023582_010 Hb_000282_020--Hb_023582_010 Hb_000282_020--Hb_023827_030 Hb_007681_010 Hb_007681_010 Hb_007853_030--Hb_007681_010 Hb_001166_010 Hb_001166_010 Hb_007853_030--Hb_001166_010 Hb_007853_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_016297_010 Hb_016297_010 Hb_023827_030--Hb_016297_010 Hb_023827_030--Hb_019053_040 Hb_023827_030--Hb_023582_010 Hb_105148_020 Hb_105148_020 Hb_023827_030--Hb_105148_020 Hb_000069_220--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000069_220--Hb_003573_030 Hb_000530_040 Hb_000530_040 Hb_000069_220--Hb_000530_040 Hb_000210_030 Hb_000210_030 Hb_000069_220--Hb_000210_030 Hb_001266_010--Hb_000005_060 Hb_034235_010 Hb_034235_010 Hb_001266_010--Hb_034235_010 Hb_011013_040 Hb_011013_040 Hb_001266_010--Hb_011013_040 Hb_001975_120 Hb_001975_120 Hb_001266_010--Hb_001975_120 Hb_009476_030 Hb_009476_030 Hb_001266_010--Hb_009476_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.85532 32.3149 12.2143 0.017602 0.00899189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0640797 0.0504207 0 0.0668346 21.3062

CAGE analysis