Hb_000069_510

Information

Type -
Description -
Location Contig69: 541974-544075
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09210g
description POPTRDRAFT_774482; centromeric histone H3 HTR12 family protein
nr
ID XP_012083238.1
description PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
swissprot
ID Q8RVQ9
description Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=1 SV=3
trembl
ID A0A067K0B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14279 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone h3-like centromeric protein htr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54252: 541162-544397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_510 0.0 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
2 Hb_001168_030 0.0941592177 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
3 Hb_010705_040 0.0994665605 - - PREDICTED: kinesin-4 [Jatropha curcas]
4 Hb_007245_030 0.1038015074 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004102_090 0.1047052865 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
6 Hb_000416_080 0.1061929766 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
7 Hb_005914_100 0.1115883014 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000614_200 0.112807075 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
9 Hb_000316_070 0.1162142219 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
10 Hb_006573_310 0.1172481026 - - Tellurite resistance protein tehA, putative [Ricinus communis]
11 Hb_011849_010 0.1182824231 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
12 Hb_003776_050 0.1191335032 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_002205_180 0.1199001814 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
14 Hb_080952_060 0.1206109023 - - PREDICTED: patellin-4 [Populus euphratica]
15 Hb_006520_030 0.121043758 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
16 Hb_004097_030 0.1216813108 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
17 Hb_001998_180 0.1222667742 - - actin binding protein, putative [Ricinus communis]
18 Hb_002928_150 0.1224920241 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
19 Hb_004241_160 0.1235324113 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
20 Hb_000364_140 0.1255081104 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]

Gene co-expression network

sample Hb_000069_510 Hb_000069_510 Hb_001168_030 Hb_001168_030 Hb_000069_510--Hb_001168_030 Hb_010705_040 Hb_010705_040 Hb_000069_510--Hb_010705_040 Hb_007245_030 Hb_007245_030 Hb_000069_510--Hb_007245_030 Hb_004102_090 Hb_004102_090 Hb_000069_510--Hb_004102_090 Hb_000416_080 Hb_000416_080 Hb_000069_510--Hb_000416_080 Hb_005914_100 Hb_005914_100 Hb_000069_510--Hb_005914_100 Hb_001168_030--Hb_007245_030 Hb_004963_020 Hb_004963_020 Hb_001168_030--Hb_004963_020 Hb_000316_070 Hb_000316_070 Hb_001168_030--Hb_000316_070 Hb_001168_030--Hb_005914_100 Hb_000614_200 Hb_000614_200 Hb_001168_030--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_001168_030--Hb_003776_050 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_000441_210 Hb_000441_210 Hb_010705_040--Hb_000441_210 Hb_010705_040--Hb_004963_020 Hb_010705_040--Hb_004102_090 Hb_002205_180 Hb_002205_180 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_007245_030--Hb_005914_100 Hb_007245_030--Hb_000614_200 Hb_007245_030--Hb_000316_070 Hb_002928_150 Hb_002928_150 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_004102_090--Hb_002205_180 Hb_004102_090--Hb_004963_020 Hb_004102_090--Hb_000441_210 Hb_004102_090--Hb_000316_070 Hb_006520_030 Hb_006520_030 Hb_004102_090--Hb_006520_030 Hb_000189_350 Hb_000189_350 Hb_004102_090--Hb_000189_350 Hb_001969_120 Hb_001969_120 Hb_000416_080--Hb_001969_120 Hb_000002_430 Hb_000002_430 Hb_000416_080--Hb_000002_430 Hb_000340_550 Hb_000340_550 Hb_000416_080--Hb_000340_550 Hb_000416_080--Hb_003776_050 Hb_005618_070 Hb_005618_070 Hb_000416_080--Hb_005618_070 Hb_011849_010 Hb_011849_010 Hb_000416_080--Hb_011849_010 Hb_004097_030 Hb_004097_030 Hb_005914_100--Hb_004097_030 Hb_005914_100--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_005914_100--Hb_004174_030 Hb_003398_050 Hb_003398_050 Hb_005914_100--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972039 0.405442 16.4995 7.20265 0 0.187886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.278199 0 0.353719 0.997788

CAGE analysis