Hb_000069_550

Information

Type -
Description -
Location Contig69: 597975-599258
Sequence    

Annotation

kegg
ID sot:102603507
description uncharacterized LOC102603507
nr
ID XP_010255931.1
description PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A067JXA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54257: 598062-599161
cDNA
(Sanger)
(ID:Location)		 007_E24.ab1: 598062-599101 , 040_C18.ab1: 598068-599098

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_550 0.0 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
2 Hb_006569_100 0.0756527482 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
3 Hb_007594_120 0.0756939244 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
4 Hb_002603_150 0.0846964242 - - PREDICTED: protein yippee-like [Jatropha curcas]
5 Hb_002876_120 0.0860418318 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
6 Hb_017948_010 0.0875374085 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
7 Hb_001191_090 0.0879151824 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
8 Hb_006573_220 0.0887012526 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
9 Hb_000817_030 0.0903399992 - - mak, putative [Ricinus communis]
10 Hb_001076_020 0.0941096157 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_032803_010 0.0978798629 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
12 Hb_000272_070 0.0980929589 - - snare protein YKt [Hevea brasiliensis]
13 Hb_001157_010 0.0983554495 - - deoxyhypusine synthase, putative [Ricinus communis]
14 Hb_027073_050 0.0985057652 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
15 Hb_000173_220 0.0987611504 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
16 Hb_000012_100 0.1002558173 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
17 Hb_002742_090 0.1005706834 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
18 Hb_000181_300 0.1006006563 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
19 Hb_003053_030 0.1006304617 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
20 Hb_001519_030 0.1010456501 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_550 Hb_000069_550 Hb_006569_100 Hb_006569_100 Hb_000069_550--Hb_006569_100 Hb_007594_120 Hb_007594_120 Hb_000069_550--Hb_007594_120 Hb_002603_150 Hb_002603_150 Hb_000069_550--Hb_002603_150 Hb_002876_120 Hb_002876_120 Hb_000069_550--Hb_002876_120 Hb_017948_010 Hb_017948_010 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_007594_120--Hb_002876_120 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_020301_040 Hb_020301_040 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_017948_010--Hb_003053_030 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.8427 15.7668 35.8117 82.5553 64.1401 55.5202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
209.033 272.39 248.747 61.7307 64.597

CAGE analysis