Hb_000069_560

Information

Type -
Description -
Location Contig69: 600115-603492
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16980g
description POPTRDRAFT_816625; hypothetical protein
nr
ID XP_002301401.1
description hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
swissprot
ID Q84JH9
description Protein trichome birefringence-like 25 OS=Arabidopsis thaliana GN=TBL25 PE=2 SV=1
trembl
ID B9GQH1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54258: 600108-603859 , PASA_asmbl_54259: 602133-603859
cDNA
(Sanger)
(ID:Location)		 052_G18.ab1: 602641-603857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_560 0.0 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
2 Hb_000260_110 0.1231173117 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_000030_130 0.1258543084 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_001102_160 0.1274346141 - - PREDICTED: galacturonokinase [Jatropha curcas]
5 Hb_000922_400 0.1330666529 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
6 Hb_019516_060 0.1364749508 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
7 Hb_001775_080 0.1379753707 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
8 Hb_004007_070 0.1470286892 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_006088_020 0.1536764195 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_000246_130 0.1559678608 - - tubulin alpha chain, putative [Ricinus communis]
11 Hb_012395_110 0.1583817209 - - PREDICTED: peroxygenase [Jatropha curcas]
12 Hb_084147_010 0.1594407505 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000011_280 0.1596320653 - - pectinesterase family protein [Populus trichocarpa]
14 Hb_000085_410 0.161377767 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
15 Hb_001369_190 0.1624655594 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
16 Hb_000086_090 0.1634128517 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000327_320 0.1635514041 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
18 Hb_000684_220 0.1655516374 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000922_050 0.1667647487 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
20 Hb_103942_030 0.1668773739 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000069_560 Hb_000069_560 Hb_000260_110 Hb_000260_110 Hb_000069_560--Hb_000260_110 Hb_000030_130 Hb_000030_130 Hb_000069_560--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000069_560--Hb_001102_160 Hb_000922_400 Hb_000922_400 Hb_000069_560--Hb_000922_400 Hb_019516_060 Hb_019516_060 Hb_000069_560--Hb_019516_060 Hb_001775_080 Hb_001775_080 Hb_000069_560--Hb_001775_080 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_084147_010 Hb_084147_010 Hb_001102_160--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_001102_160--Hb_000246_130 Hb_006002_050 Hb_006002_050 Hb_000922_400--Hb_006002_050 Hb_000345_550 Hb_000345_550 Hb_000922_400--Hb_000345_550 Hb_033720_030 Hb_033720_030 Hb_000922_400--Hb_033720_030 Hb_005784_010 Hb_005784_010 Hb_000922_400--Hb_005784_010 Hb_012055_070 Hb_012055_070 Hb_000922_400--Hb_012055_070 Hb_002783_280 Hb_002783_280 Hb_000922_400--Hb_002783_280 Hb_019516_060--Hb_000246_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_006569_080 Hb_006569_080 Hb_001775_080--Hb_006569_080 Hb_015941_010 Hb_015941_010 Hb_001775_080--Hb_015941_010 Hb_001775_080--Hb_019516_060 Hb_001775_080--Hb_000922_400 Hb_005305_040 Hb_005305_040 Hb_001775_080--Hb_005305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15014 6.04066 11.4126 43.4455 0.683374 0.874132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39513 1.44063 0.645931 0.857289 10.3114

CAGE analysis