Hb_000069_580

Information

Type -
Description -
Location Contig69: 635547-635879
Sequence    

Annotation

kegg
ID rcu:RCOM_0236920
description hypothetical protein
nr
ID XP_002533908.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0236920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_580 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008221_020 0.0289911478 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
3 Hb_002435_020 0.0389535242 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_002259_180 0.1020391055 - - -
5 Hb_006355_120 0.1202236796 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001410_050 0.1252425911 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_001246_050 0.1482327999 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
8 Hb_011174_030 0.2456413962 - - -
9 Hb_005946_180 0.2524465203 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
10 Hb_008014_060 0.2553193062 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_001190_050 0.2604507408 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
12 Hb_000139_210 0.2608466979 - - -
13 Hb_000264_330 0.2634149648 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
14 Hb_002791_040 0.2650408746 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_004163_020 0.2713855316 - - -
16 Hb_004970_080 0.2720846249 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
17 Hb_001950_130 0.2743900468 - - -
18 Hb_010534_030 0.2756089571 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_000752_030 0.2760130547 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
20 Hb_000661_210 0.287569077 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000069_580 Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_000069_580--Hb_008221_020 Hb_002435_020 Hb_002435_020 Hb_000069_580--Hb_002435_020 Hb_002259_180 Hb_002259_180 Hb_000069_580--Hb_002259_180 Hb_006355_120 Hb_006355_120 Hb_000069_580--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_000069_580--Hb_001410_050 Hb_001246_050 Hb_001246_050 Hb_000069_580--Hb_001246_050 Hb_008221_020--Hb_002435_020 Hb_008221_020--Hb_001246_050 Hb_008221_020--Hb_002259_180 Hb_008221_020--Hb_006355_120 Hb_008221_020--Hb_001410_050 Hb_002435_020--Hb_002259_180 Hb_002435_020--Hb_006355_120 Hb_002435_020--Hb_001410_050 Hb_002435_020--Hb_001246_050 Hb_002259_180--Hb_006355_120 Hb_002259_180--Hb_001410_050 Hb_005946_180 Hb_005946_180 Hb_002259_180--Hb_005946_180 Hb_006355_120--Hb_001410_050 Hb_006355_120--Hb_005946_180 Hb_000139_210 Hb_000139_210 Hb_006355_120--Hb_000139_210 Hb_001410_050--Hb_005946_180 Hb_001410_050--Hb_000139_210 Hb_008014_060 Hb_008014_060 Hb_001246_050--Hb_008014_060 Hb_004163_020 Hb_004163_020 Hb_001246_050--Hb_004163_020 Hb_001246_050--Hb_002259_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.729584 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.458839 0 0 0

CAGE analysis