Hb_000069_620

Information

Type -
Description -
Location Contig69: 677645-680612
Sequence    

Annotation

kegg
ID rcu:RCOM_0149750
description serine-threonine protein kinase, putative (EC:2.7.10.1)
nr
ID XP_002532661.1
description serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID P25848
description Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3
trembl
ID B9T342
description Serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0149750 PE=4 SV=1
Gene Ontology
ID GO:0004712
description mitogen-activated protein kinase kinase kinase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_620 0.0 - - serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_002675_090 0.1673555583 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001217_040 0.1825695448 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
4 Hb_024074_020 0.1882554793 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
5 Hb_002046_150 0.1884881983 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
6 Hb_008054_050 0.1890428746 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
7 Hb_000340_190 0.1920069845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005539_310 0.2033897993 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
9 Hb_008232_030 0.2090125851 - - -
10 Hb_003097_120 0.2099464272 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
11 Hb_118507_010 0.2171189065 - - hypothetical protein VITISV_019292 [Vitis vinifera]
12 Hb_000991_040 0.2178534272 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
13 Hb_008119_030 0.2200042705 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
14 Hb_001195_410 0.2204878663 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
15 Hb_054865_160 0.2210394464 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
16 Hb_001754_060 0.2218472605 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
17 Hb_000637_020 0.2231855185 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
18 Hb_183610_010 0.2232455589 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
19 Hb_004453_070 0.2233875257 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
20 Hb_066514_010 0.2234498356 - - hypothetical protein RCOM_0204720 [Ricinus communis]

Gene co-expression network

sample Hb_000069_620 Hb_000069_620 Hb_002675_090 Hb_002675_090 Hb_000069_620--Hb_002675_090 Hb_001217_040 Hb_001217_040 Hb_000069_620--Hb_001217_040 Hb_024074_020 Hb_024074_020 Hb_000069_620--Hb_024074_020 Hb_002046_150 Hb_002046_150 Hb_000069_620--Hb_002046_150 Hb_008054_050 Hb_008054_050 Hb_000069_620--Hb_008054_050 Hb_000340_190 Hb_000340_190 Hb_000069_620--Hb_000340_190 Hb_002900_100 Hb_002900_100 Hb_002675_090--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_002675_090--Hb_066514_010 Hb_145317_010 Hb_145317_010 Hb_002675_090--Hb_145317_010 Hb_008119_030 Hb_008119_030 Hb_002675_090--Hb_008119_030 Hb_000637_020 Hb_000637_020 Hb_002675_090--Hb_000637_020 Hb_005539_310 Hb_005539_310 Hb_001217_040--Hb_005539_310 Hb_000260_600 Hb_000260_600 Hb_001217_040--Hb_000260_600 Hb_000359_140 Hb_000359_140 Hb_001217_040--Hb_000359_140 Hb_000984_310 Hb_000984_310 Hb_001217_040--Hb_000984_310 Hb_000245_080 Hb_000245_080 Hb_001217_040--Hb_000245_080 Hb_000890_230 Hb_000890_230 Hb_001217_040--Hb_000890_230 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_002046_150--Hb_012651_010 Hb_000665_190 Hb_000665_190 Hb_002046_150--Hb_000665_190 Hb_000359_310 Hb_000359_310 Hb_002046_150--Hb_000359_310 Hb_002046_150--Hb_000002_480 Hb_000193_300 Hb_000193_300 Hb_002046_150--Hb_000193_300 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_161994_040 Hb_161994_040 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_008054_050--Hb_001217_040 Hb_003097_120 Hb_003097_120 Hb_000340_190--Hb_003097_120 Hb_000340_190--Hb_002046_150 Hb_004725_050 Hb_004725_050 Hb_000340_190--Hb_004725_050 Hb_001856_220 Hb_001856_220 Hb_000340_190--Hb_001856_220 Hb_000991_040 Hb_000991_040 Hb_000340_190--Hb_000991_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0834385 0.191261 0.120134 0.551879 0.0945149 0.079367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0200842 0.079017 0.120194 0.0125627 0.0334962

CAGE analysis