Hb_000069_640

Information

Type -
Description -
Location Contig69: 693215-698368
Sequence    

Annotation

kegg
ID vvi:100267092
description tubulin gamma-1 chain-like
nr
ID XP_010661882.1
description PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
swissprot
ID P38557
description Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=1 SV=1
trembl
ID D7UCL1
description Tubulin gamma chain OS=Vitis vinifera GN=VIT_15s0046g01350 PE=3 SV=1
Gene Ontology
ID GO:0000930
description tubulin gamma-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54282: 692392-692910 , PASA_asmbl_54283: 693247-698388
cDNA
(Sanger)
(ID:Location)		 043_P03.ab1: 693544-695771 , 047_B05.ab1: 693250-695082 , 050_J10.ab1: 692392-692908

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_640 0.0 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
2 Hb_000080_130 0.0755837724 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_000603_160 0.0787465451 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
4 Hb_005653_070 0.0788718447 - - K+ transport growth defect-like protein [Hevea brasiliensis]
5 Hb_004754_050 0.0792449076 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
6 Hb_000705_230 0.0794312935 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
7 Hb_013394_050 0.0799750396 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
8 Hb_002157_120 0.0801317094 - - conserved hypothetical protein [Ricinus communis]
9 Hb_189216_010 0.0862108222 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_004055_120 0.086628629 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
11 Hb_053709_050 0.0872004728 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_005563_070 0.0890790293 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
13 Hb_038574_010 0.0894384846 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
14 Hb_000703_190 0.0898105998 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
15 Hb_000152_600 0.0900870906 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
16 Hb_001454_230 0.0907315243 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
17 Hb_000197_020 0.091903033 - - PREDICTED: protein RER1A [Jatropha curcas]
18 Hb_000365_270 0.0919215483 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
19 Hb_005016_040 0.0926948476 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
20 Hb_003913_130 0.0938250641 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_640 Hb_000069_640 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000705_230 Hb_000705_230 Hb_000069_640--Hb_000705_230 Hb_013394_050 Hb_013394_050 Hb_000069_640--Hb_013394_050 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_002572_020 Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_007975_060 Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_000058_130 Hb_000058_130 Hb_004754_050--Hb_000058_130 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_019181_030 Hb_019181_030 Hb_013394_050--Hb_019181_030 Hb_013394_050--Hb_000197_020 Hb_000244_170 Hb_000244_170 Hb_013394_050--Hb_000244_170 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99275 13.0388 22.3874 29.5581 7.11389 9.66969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2496 15.3583 17.5447 10.6425 17.6141

CAGE analysis