Hb_000069_660

Information

Type -
Description -
Location Contig69: 701033-705878
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16920g
description POPTRDRAFT_755366; mitochondrial substrate carrier family protein
nr
ID XP_012083258.1
description PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
swissprot
ID Q944H5
description Mitochondrial carrier protein MTM1 OS=Arabidopsis thaliana GN=MTM1 PE=2 SV=1
trembl
ID A0A067K0C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14294 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54286: 701032-705892 , PASA_asmbl_54287: 701714-701819 , PASA_asmbl_54288: 706349-707825
cDNA
(Sanger)
(ID:Location)		 041_G01.ab1: 701298-703959

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_660 0.0 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
2 Hb_000530_070 0.1269164767 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
3 Hb_003581_220 0.1325392732 - - unnamed protein product [Vitis vinifera]
4 Hb_001846_070 0.1337915663 - - PREDICTED: fructokinase-1 [Jatropha curcas]
5 Hb_002182_030 0.1382628668 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
6 Hb_001157_010 0.1404164799 - - deoxyhypusine synthase, putative [Ricinus communis]
7 Hb_007594_120 0.1404447879 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
8 Hb_000069_550 0.1427683794 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
9 Hb_003581_260 0.1442495306 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
10 Hb_001135_210 0.1450732495 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
11 Hb_009485_010 0.1479368053 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
12 Hb_032803_010 0.1483514549 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
13 Hb_000802_100 0.1516036807 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
14 Hb_002876_120 0.1522122347 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
15 Hb_006420_030 0.1536516748 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_000963_140 0.1542346743 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000836_130 0.1551059899 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
18 Hb_005539_240 0.1574672824 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
19 Hb_000479_080 0.1582114102 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_000264_020 0.1593306472 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_660 Hb_000069_660 Hb_000530_070 Hb_000530_070 Hb_000069_660--Hb_000530_070 Hb_003581_220 Hb_003581_220 Hb_000069_660--Hb_003581_220 Hb_001846_070 Hb_001846_070 Hb_000069_660--Hb_001846_070 Hb_002182_030 Hb_002182_030 Hb_000069_660--Hb_002182_030 Hb_001157_010 Hb_001157_010 Hb_000069_660--Hb_001157_010 Hb_007594_120 Hb_007594_120 Hb_000069_660--Hb_007594_120 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_000530_070--Hb_001157_010 Hb_000530_070--Hb_003581_220 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_003581_220--Hb_001846_070 Hb_003581_220--Hb_001076_020 Hb_001846_070--Hb_000530_070 Hb_000264_020 Hb_000264_020 Hb_001846_070--Hb_000264_020 Hb_002759_240 Hb_002759_240 Hb_001846_070--Hb_002759_240 Hb_146225_010 Hb_146225_010 Hb_001846_070--Hb_146225_010 Hb_001846_070--Hb_002182_030 Hb_006472_050 Hb_006472_050 Hb_002182_030--Hb_006472_050 Hb_001135_210 Hb_001135_210 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_007594_120--Hb_002876_120 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_020301_040 Hb_020301_040 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97346 1.89572 4.36145 8.51519 10.435 2.95761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1274 38.5814 45.8898 3.84225 9.31502

CAGE analysis