Hb_000069_690

Information

Type transcription factor
Description TF Family: ERF
Location Contig69: 719188-720093
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16900g
description POPTRDRAFT_755364; hypothetical protein
nr
ID XP_012083262.1
description PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
swissprot
ID Q9SUE3
description Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2
trembl
ID A0A067K8B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_690 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
2 Hb_000922_350 0.0690068598 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
3 Hb_000252_260 0.117130335 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_000659_040 0.1227823564 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_000272_030 0.1319837035 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
6 Hb_000326_080 0.1398959155 - - lrr receptor protein kinase, putative [Ricinus communis]
7 Hb_000856_200 0.1423916912 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
8 Hb_003266_090 0.1433901646 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
9 Hb_031862_120 0.1459438273 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
10 Hb_006570_060 0.1510904971 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
11 Hb_000227_280 0.1512686363 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
12 Hb_004241_110 0.1515069127 - - Minor allergen Alt a, putative [Ricinus communis]
13 Hb_000941_090 0.1528448379 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
14 Hb_005488_130 0.1532837771 - - transporter, putative [Ricinus communis]
15 Hb_007894_070 0.154399765 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
16 Hb_000363_250 0.1559119531 - - PREDICTED: pirin-like protein [Malus domestica]
17 Hb_001951_190 0.1559993092 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
18 Hb_001318_100 0.1579613453 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
19 Hb_003581_050 0.1585322989 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
20 Hb_000260_410 0.1590770131 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_690 Hb_000069_690 Hb_000922_350 Hb_000922_350 Hb_000069_690--Hb_000922_350 Hb_000252_260 Hb_000252_260 Hb_000069_690--Hb_000252_260 Hb_000659_040 Hb_000659_040 Hb_000069_690--Hb_000659_040 Hb_000272_030 Hb_000272_030 Hb_000069_690--Hb_000272_030 Hb_000326_080 Hb_000326_080 Hb_000069_690--Hb_000326_080 Hb_000856_200 Hb_000856_200 Hb_000069_690--Hb_000856_200 Hb_000922_350--Hb_000659_040 Hb_003494_220 Hb_003494_220 Hb_000922_350--Hb_003494_220 Hb_000922_350--Hb_000252_260 Hb_004241_110 Hb_004241_110 Hb_000922_350--Hb_004241_110 Hb_000160_250 Hb_000160_250 Hb_000922_350--Hb_000160_250 Hb_000252_260--Hb_000326_080 Hb_000252_260--Hb_000272_030 Hb_031862_120 Hb_031862_120 Hb_000252_260--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000252_260--Hb_001951_230 Hb_000252_260--Hb_000659_040 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000326_080--Hb_031862_120 Hb_000326_080--Hb_001951_230 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100 Hb_010222_040 Hb_010222_040 Hb_000856_200--Hb_010222_040 Hb_010557_020 Hb_010557_020 Hb_000856_200--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_000856_200--Hb_000290_030 Hb_000473_100 Hb_000473_100 Hb_000856_200--Hb_000473_100 Hb_001046_030 Hb_001046_030 Hb_000856_200--Hb_001046_030 Hb_144449_010 Hb_144449_010 Hb_000856_200--Hb_144449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.01749 0.982668 1.81594 0.0502091 0.0286446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114791 0.135411 0 0.291178 1.55786

CAGE analysis