Hb_000069_700

Information

Type -
Description -
Location Contig69: 721979-727029
Sequence    

Annotation

kegg
ID fve:101297588
description ubiquitin-conjugating enzyme E2 10-like isoform 1
nr
ID KJB27643.1
description hypothetical protein B456_005G003200 [Gossypium raimondii]
swissprot
ID Q94F47
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
trembl
ID I1L6Y6
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54290: 722148-726960 , PASA_asmbl_54291: 722150-727001 , PASA_asmbl_54292: 722619-723138 , PASA_asmbl_54295: 726167-726719
cDNA
(Sanger)
(ID:Location)		 002_G05.ab1: 722148-726960 , 028_M23.ab1: 722152-726960 , 034_O09.ab1: 722347-727001

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_700 0.0 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
2 Hb_001172_120 0.067656871 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
3 Hb_001235_110 0.0821488602 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
4 Hb_001726_040 0.084996918 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
5 Hb_001633_030 0.0913117221 - - -
6 Hb_007192_100 0.0959652291 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
7 Hb_000567_410 0.0965507152 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
8 Hb_001314_040 0.0979023358 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
9 Hb_006478_160 0.1014457408 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_000224_140 0.1047792698 - - ribonuclease z, chloroplast, putative [Ricinus communis]
11 Hb_015807_100 0.1054112445 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_004057_010 0.1054908855 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
13 Hb_000115_230 0.1055900267 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_000181_300 0.1073645114 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
15 Hb_000645_140 0.107802435 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
16 Hb_000093_110 0.1085344906 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
17 Hb_000802_100 0.1103580828 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
18 Hb_011671_390 0.1113631634 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
19 Hb_000193_120 0.1118083421 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
20 Hb_000012_100 0.1132236243 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000069_700 Hb_000069_700 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320 Hb_004057_010 Hb_004057_010 Hb_001726_040--Hb_004057_010 Hb_000087_130 Hb_000087_130 Hb_001726_040--Hb_000087_130 Hb_002081_030 Hb_002081_030 Hb_001726_040--Hb_002081_030 Hb_000189_240 Hb_000189_240 Hb_001726_040--Hb_000189_240 Hb_000735_040 Hb_000735_040 Hb_001726_040--Hb_000735_040 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_000181_300 Hb_000181_300 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_153112_030 Hb_153112_030 Hb_001633_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_001633_030--Hb_004459_040 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4078 14.2389 24.4472 20.1136 8.31555 11.6469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.493 93.8304 53.1479 14.1287 18.0747

CAGE analysis