Hb_000069_760

Information

Type -
Description -
Location Contig69: 764715-766959
Sequence    

Annotation

kegg
ID rcu:RCOM_1617300
description Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative
nr
ID XP_012083273.1
description PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
swissprot
ID O04616
description Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana GN=CURT1A PE=1 SV=1
trembl
ID A0A067K0D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14304 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein curvature thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54305: 764650-766929 , PASA_asmbl_54306: 765543-765868
cDNA
(Sanger)
(ID:Location)		 034_O17.ab1: 764699-766871 , 035_O13.ab1: 764699-766902 , 038_F18.ab1: 764728-766804 , 043_G03.ab1: 764712-766887 , 043_G09.ab1: 764728-766787 , 051_F19.ab1: 764709-766890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_760 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
2 Hb_000390_160 0.0608600239 - - PREDICTED: adenosine kinase [Jatropha curcas]
3 Hb_000185_010 0.0625437631 - - Alliin lyase precursor, putative [Ricinus communis]
4 Hb_006132_080 0.0781055042 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
5 Hb_002121_050 0.0789141535 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
6 Hb_156093_010 0.0806962226 - - hypothetical protein RCOM_0504250 [Ricinus communis]
7 Hb_003777_080 0.0812624884 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
8 Hb_001141_340 0.0823780635 - - PREDICTED: cysteine synthase [Jatropha curcas]
9 Hb_003020_120 0.0861322719 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
10 Hb_087599_010 0.0867093273 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
11 Hb_000049_100 0.0872369076 - - Photosystem II reaction center W protein, putative [Ricinus communis]
12 Hb_004899_190 0.0873658231 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
13 Hb_003632_020 0.087530234 - - calcium-binding family protein [Populus trichocarpa]
14 Hb_002592_040 0.0880469144 - - ACC oxidase 3 [Hevea brasiliensis]
15 Hb_002870_070 0.0884772652 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_008195_070 0.0887383057 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_010326_020 0.0892317573 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
18 Hb_000008_160 0.0894221701 - - carboxy-lyase, putative [Ricinus communis]
19 Hb_153258_040 0.0898975913 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
20 Hb_033187_010 0.0901465856 - - epoxide hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_760 Hb_000069_760 Hb_000390_160 Hb_000390_160 Hb_000069_760--Hb_000390_160 Hb_000185_010 Hb_000185_010 Hb_000069_760--Hb_000185_010 Hb_006132_080 Hb_006132_080 Hb_000069_760--Hb_006132_080 Hb_002121_050 Hb_002121_050 Hb_000069_760--Hb_002121_050 Hb_156093_010 Hb_156093_010 Hb_000069_760--Hb_156093_010 Hb_003777_080 Hb_003777_080 Hb_000069_760--Hb_003777_080 Hb_000049_100 Hb_000049_100 Hb_000390_160--Hb_000049_100 Hb_000390_160--Hb_003777_080 Hb_001141_340 Hb_001141_340 Hb_000390_160--Hb_001141_340 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_005210_010 Hb_005210_010 Hb_000390_160--Hb_005210_010 Hb_000012_370 Hb_000012_370 Hb_000185_010--Hb_000012_370 Hb_000008_160 Hb_000008_160 Hb_000185_010--Hb_000008_160 Hb_087599_010 Hb_087599_010 Hb_000185_010--Hb_087599_010 Hb_000185_010--Hb_156093_010 Hb_000185_010--Hb_006132_080 Hb_006132_080--Hb_002121_050 Hb_003186_030 Hb_003186_030 Hb_006132_080--Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_006132_080--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_006132_080--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_002121_050--Hb_002752_020 Hb_002121_050--Hb_156093_010 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040 Hb_156093_010--Hb_007537_040 Hb_156093_010--Hb_003777_080 Hb_000369_110 Hb_000369_110 Hb_156093_010--Hb_000369_110 Hb_004970_060 Hb_004970_060 Hb_156093_010--Hb_004970_060 Hb_003777_080--Hb_087599_010 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_153258_040 Hb_153258_040 Hb_003777_080--Hb_153258_040 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_003777_080--Hb_004970_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244759 3.13488 170.631 82.2146 0.243071 0.115731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47628 1.71605 0.274825 8.07961 322.359

CAGE analysis