Hb_000069_770

Information

Type -
Description -
Location Contig69: 765842-767854
Sequence    

Annotation

kegg
ID mus:103973724
description eukaryotic translation initiation factor 1A-like
nr
ID ACH63231.1
description translation initiation factor [Rheum australe]
swissprot
ID P47815
description Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2
trembl
ID B5M1Y2
description Translation initiation factor OS=Rheum australe PE=2 SV=1
Gene Ontology
ID GO:0005488
description eukaryotic translation initiation factor 1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54307: 767406-767871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_770 0.0 - - translation initiation factor [Rheum australe]
2 Hb_021576_020 0.2249951317 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
3 Hb_007904_240 0.2448663452 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
4 Hb_006726_010 0.2817684937 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
5 Hb_000487_120 0.2827816027 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002998_070 0.2911513867 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
7 Hb_005306_010 0.2941202673 - - -
8 Hb_000712_050 0.2945238599 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
9 Hb_000042_220 0.3019458519 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
10 Hb_110390_010 0.3077527057 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
11 Hb_012163_020 0.3108658448 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
12 Hb_001554_010 0.3120430622 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
13 Hb_007943_060 0.3130887624 - - Rop5 [Hevea brasiliensis]
14 Hb_001221_330 0.3190135408 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
15 Hb_003097_060 0.3192184532 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
16 Hb_000027_040 0.3244124282 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
17 Hb_002194_090 0.3256876647 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_007672_030 0.3259250597 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
19 Hb_000200_200 0.3290369706 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
20 Hb_189216_030 0.3302784072 - - Pleiotropic drug resistance protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_770 Hb_000069_770 Hb_021576_020 Hb_021576_020 Hb_000069_770--Hb_021576_020 Hb_007904_240 Hb_007904_240 Hb_000069_770--Hb_007904_240 Hb_006726_010 Hb_006726_010 Hb_000069_770--Hb_006726_010 Hb_000487_120 Hb_000487_120 Hb_000069_770--Hb_000487_120 Hb_002998_070 Hb_002998_070 Hb_000069_770--Hb_002998_070 Hb_005306_010 Hb_005306_010 Hb_000069_770--Hb_005306_010 Hb_001554_010 Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_021576_020--Hb_002998_070 Hb_021576_020--Hb_007904_240 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_000878_140 Hb_000878_140 Hb_007904_240--Hb_000878_140 Hb_007904_240--Hb_002998_070 Hb_007904_240--Hb_006726_010 Hb_007943_060 Hb_007943_060 Hb_007904_240--Hb_007943_060 Hb_006726_010--Hb_021576_020 Hb_000061_200 Hb_000061_200 Hb_006726_010--Hb_000061_200 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000388_030 Hb_000388_030 Hb_006726_010--Hb_000388_030 Hb_001221_330 Hb_001221_330 Hb_000487_120--Hb_001221_330 Hb_001545_070 Hb_001545_070 Hb_000487_120--Hb_001545_070 Hb_005181_160 Hb_005181_160 Hb_000487_120--Hb_005181_160 Hb_022250_020 Hb_022250_020 Hb_000487_120--Hb_022250_020 Hb_002374_080 Hb_002374_080 Hb_000487_120--Hb_002374_080 Hb_001114_080 Hb_001114_080 Hb_000487_120--Hb_001114_080 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_002998_070--Hb_001221_330 Hb_001638_230 Hb_001638_230 Hb_005306_010--Hb_001638_230 Hb_005306_010--Hb_075247_010 Hb_005306_010--Hb_002998_070 Hb_010050_050 Hb_010050_050 Hb_005306_010--Hb_010050_050 Hb_158092_010 Hb_158092_010 Hb_005306_010--Hb_158092_010 Hb_000211_030 Hb_000211_030 Hb_005306_010--Hb_000211_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.154231 0.168354 0.0932333 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115586 0.0908233 0.313209 0.112397 0

CAGE analysis