Hb_000070_030

Information

Type -
Description -
Location Contig70: 51183-59474
Sequence    

Annotation

kegg
ID rcu:RCOM_1689300
description respiratory burst oxidase, putative (EC:1.6.3.1)
nr
ID XP_012086808.1
description PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
swissprot
ID Q948U0
description Respiratory burst oxidase homolog protein A OS=Solanum tuberosum GN=RBOHA PE=1 SV=1
trembl
ID A0A067JN07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20527 PE=4 SV=1
Gene Ontology
ID GO:0016021
description respiratory burst oxidase homolog protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54780: 50704-59211 , PASA_asmbl_54781: 50704-59211 , PASA_asmbl_54782: 52867-53086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000070_030 0.0 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
2 Hb_003398_100 0.1060789065 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001008_050 0.1372242117 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
4 Hb_002784_030 0.138639084 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
5 Hb_005323_010 0.1447028003 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
6 Hb_000634_020 0.1455122394 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
7 Hb_000684_080 0.1472229889 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
8 Hb_092000_010 0.1483277504 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
9 Hb_000371_010 0.1485121877 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
10 Hb_000103_570 0.1486245156 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
11 Hb_000172_540 0.1520369316 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
12 Hb_002804_020 0.1523866475 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
13 Hb_085742_010 0.1535503041 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
14 Hb_002478_030 0.1536969109 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
15 Hb_033642_040 0.1543586195 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_001153_050 0.1544226522 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
17 Hb_016347_020 0.1555674981 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_003124_030 0.156461874 - - At4g33625-like protein [Brassica napus]
19 Hb_000562_050 0.1584677356 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
20 Hb_001519_040 0.1596123088 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]

Gene co-expression network

sample Hb_000070_030 Hb_000070_030 Hb_003398_100 Hb_003398_100 Hb_000070_030--Hb_003398_100 Hb_001008_050 Hb_001008_050 Hb_000070_030--Hb_001008_050 Hb_002784_030 Hb_002784_030 Hb_000070_030--Hb_002784_030 Hb_005323_010 Hb_005323_010 Hb_000070_030--Hb_005323_010 Hb_000634_020 Hb_000634_020 Hb_000070_030--Hb_000634_020 Hb_000684_080 Hb_000684_080 Hb_000070_030--Hb_000684_080 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_003398_100--Hb_002784_030 Hb_073973_150 Hb_073973_150 Hb_003398_100--Hb_073973_150 Hb_000320_470 Hb_000320_470 Hb_001008_050--Hb_000320_470 Hb_000181_100 Hb_000181_100 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001935_160 Hb_001935_160 Hb_001008_050--Hb_001935_160 Hb_001008_070 Hb_001008_070 Hb_001008_050--Hb_001008_070 Hb_089246_010 Hb_089246_010 Hb_001008_050--Hb_089246_010 Hb_000640_070 Hb_000640_070 Hb_002784_030--Hb_000640_070 Hb_001552_030 Hb_001552_030 Hb_002784_030--Hb_001552_030 Hb_012215_010 Hb_012215_010 Hb_002784_030--Hb_012215_010 Hb_008397_010 Hb_008397_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_002784_030--Hb_073973_150 Hb_001153_050 Hb_001153_050 Hb_005323_010--Hb_001153_050 Hb_006573_160 Hb_006573_160 Hb_005323_010--Hb_006573_160 Hb_000878_160 Hb_000878_160 Hb_005323_010--Hb_000878_160 Hb_005323_010--Hb_073973_150 Hb_005323_010--Hb_003398_100 Hb_033554_020 Hb_033554_020 Hb_005323_010--Hb_033554_020 Hb_002837_040 Hb_002837_040 Hb_000634_020--Hb_002837_040 Hb_006588_160 Hb_006588_160 Hb_000634_020--Hb_006588_160 Hb_000261_210 Hb_000261_210 Hb_000634_020--Hb_000261_210 Hb_002749_080 Hb_002749_080 Hb_000634_020--Hb_002749_080 Hb_000634_020--Hb_000684_080 Hb_004096_060 Hb_004096_060 Hb_000634_020--Hb_004096_060 Hb_016347_020 Hb_016347_020 Hb_000684_080--Hb_016347_020 Hb_121089_030 Hb_121089_030 Hb_000684_080--Hb_121089_030 Hb_000317_510 Hb_000317_510 Hb_000684_080--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_000684_080--Hb_000373_080 Hb_030736_060 Hb_030736_060 Hb_000684_080--Hb_030736_060 Hb_000684_080--Hb_002784_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4501 6.3349 14.0587 10.1495 5.60903 8.40457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00033 1.17329 3.41173 10.8149 9.91263

CAGE analysis