Hb_000070_110

Information

Type -
Description -
Location Contig70: 223628-236237
Sequence    

Annotation

kegg
ID tcc:TCM_047025
description RING/U-box superfamily protein, putative
nr
ID XP_012086814.1
description PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G5K5
description RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_047025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54786: 232075-232241 , PASA_asmbl_54787: 232269-232544 , PASA_asmbl_54788: 234120-235991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000070_110 0.0 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
2 Hb_000130_200 0.0731646389 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
3 Hb_002529_090 0.0772338003 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
4 Hb_178968_080 0.1044155269 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
5 Hb_002232_160 0.1085462799 - - Transaminase mtnE, putative [Ricinus communis]
6 Hb_000032_600 0.1097852661 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_000890_080 0.1109543982 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
8 Hb_000622_060 0.1157075669 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
9 Hb_033152_110 0.1221346793 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
10 Hb_001040_150 0.1263564973 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009803_020 0.1271768759 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
12 Hb_180378_010 0.1300241024 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
13 Hb_003440_020 0.1314773582 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_002811_200 0.1316021891 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
15 Hb_000210_080 0.1337166865 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
16 Hb_004348_040 0.1352586007 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
17 Hb_001405_080 0.1354791627 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
18 Hb_007229_050 0.1368037114 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
19 Hb_000115_360 0.1392880066 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_006185_030 0.1404095694 - - threonine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000070_110 Hb_000070_110 Hb_000130_200 Hb_000130_200 Hb_000070_110--Hb_000130_200 Hb_002529_090 Hb_002529_090 Hb_000070_110--Hb_002529_090 Hb_178968_080 Hb_178968_080 Hb_000070_110--Hb_178968_080 Hb_002232_160 Hb_002232_160 Hb_000070_110--Hb_002232_160 Hb_000032_600 Hb_000032_600 Hb_000070_110--Hb_000032_600 Hb_000890_080 Hb_000890_080 Hb_000070_110--Hb_000890_080 Hb_000622_060 Hb_000622_060 Hb_000130_200--Hb_000622_060 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_000130_200--Hb_002529_090 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_003440_020 Hb_003440_020 Hb_002529_090--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_002529_090--Hb_004348_040 Hb_002529_090--Hb_002232_160 Hb_178968_080--Hb_000032_600 Hb_001040_150 Hb_001040_150 Hb_178968_080--Hb_001040_150 Hb_178968_080--Hb_000622_060 Hb_001054_060 Hb_001054_060 Hb_178968_080--Hb_001054_060 Hb_002232_160--Hb_000890_080 Hb_002232_160--Hb_003440_020 Hb_005015_110 Hb_005015_110 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070 Hb_067664_010 Hb_067664_010 Hb_000032_600--Hb_067664_010 Hb_000032_600--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_000032_600--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_000032_600--Hb_001754_120 Hb_000890_080--Hb_003440_020 Hb_000890_080--Hb_004348_040 Hb_000890_080--Hb_002529_090 Hb_007416_110 Hb_007416_110 Hb_000890_080--Hb_007416_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268681 1.7192 3.88297 3.77179 0.374434 0.244266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40596 1.74413 1.49061 4.73764 7.70167

CAGE analysis