Hb_000070_140

Information

Type transcription factor
Description TF Family: WRKY
Location Contig70: 263224-264531
Sequence    

Annotation

kegg
ID rcu:RCOM_1689100
description WRKY transcription factor, putative
nr
ID XP_002509862.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID B9RCH8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1689100 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000070_140 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_002294_010 0.0834859417 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
3 Hb_003636_010 0.0904273997 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
4 Hb_012268_010 0.1052725613 - - glutamic acid-rich protein [Manihot esculenta]
5 Hb_118777_010 0.1147593931 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_012553_010 0.1182545733 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
7 Hb_005588_020 0.1199292757 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
8 Hb_001268_070 0.1226614575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_166257_010 0.1323192156 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
10 Hb_003117_060 0.1337941689 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_005054_300 0.135047131 - - aquaporin [Hevea brasiliensis]
12 Hb_124207_010 0.1367287906 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001363_030 0.1406667337 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
14 Hb_001514_100 0.1454865945 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
15 Hb_001486_130 0.1478675686 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
16 Hb_000535_030 0.1494394853 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_001363_010 0.1506954482 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
18 Hb_000291_020 0.1556017561 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
19 Hb_000512_080 0.1561159376 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_009297_010 0.1567941463 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000070_140 Hb_000070_140 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_003636_010 Hb_003636_010 Hb_000070_140--Hb_003636_010 Hb_012268_010 Hb_012268_010 Hb_000070_140--Hb_012268_010 Hb_118777_010 Hb_118777_010 Hb_000070_140--Hb_118777_010 Hb_012553_010 Hb_012553_010 Hb_000070_140--Hb_012553_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020 Hb_001514_100 Hb_001514_100 Hb_002294_010--Hb_001514_100 Hb_000417_030 Hb_000417_030 Hb_002294_010--Hb_000417_030 Hb_002294_010--Hb_118777_010 Hb_001363_030 Hb_001363_030 Hb_002294_010--Hb_001363_030 Hb_000003_620 Hb_000003_620 Hb_002294_010--Hb_000003_620 Hb_003636_010--Hb_118777_010 Hb_003117_060 Hb_003117_060 Hb_003636_010--Hb_003117_060 Hb_000512_080 Hb_000512_080 Hb_003636_010--Hb_000512_080 Hb_106969_010 Hb_106969_010 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_000535_030 Hb_000535_030 Hb_012268_010--Hb_000535_030 Hb_001363_010 Hb_001363_010 Hb_012268_010--Hb_001363_010 Hb_012268_010--Hb_003636_010 Hb_001810_010 Hb_001810_010 Hb_012268_010--Hb_001810_010 Hb_012268_010--Hb_003117_060 Hb_118777_010--Hb_003117_060 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_118777_010--Hb_001363_030 Hb_118777_010--Hb_106969_010 Hb_001268_070 Hb_001268_070 Hb_012553_010--Hb_001268_070 Hb_124207_010 Hb_124207_010 Hb_012553_010--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_012553_010--Hb_166257_010 Hb_000291_020 Hb_000291_020 Hb_012553_010--Hb_000291_020 Hb_002787_100 Hb_002787_100 Hb_012553_010--Hb_002787_100 Hb_001486_130 Hb_001486_130 Hb_005588_020--Hb_001486_130 Hb_005588_020--Hb_012268_010 Hb_005588_020--Hb_001268_070 Hb_005054_300 Hb_005054_300 Hb_005588_020--Hb_005054_300 Hb_000977_160 Hb_000977_160 Hb_005588_020--Hb_000977_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.17049 0.263091 0.0358939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.05778 0.0804054

CAGE analysis