Hb_000071_040

Information

Type -
Description -
Location Contig71: 25754-27465
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24580g
description POPTRDRAFT_549181; hypothetical protein
nr
ID XP_002298361.2
description hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
swissprot
ID Q6DR24
description Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1
trembl
ID B9GJP3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24580g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_040 0.0 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
2 Hb_001616_010 0.1170070734 - - hypothetical protein RCOM_1749890 [Ricinus communis]
3 Hb_001213_060 0.1337023579 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
4 Hb_002020_010 0.1443061726 - - kinase-like protein [Corylus avellana]
5 Hb_085829_010 0.1517381934 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
6 Hb_000086_530 0.1527565089 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001856_260 0.1534962297 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
8 Hb_002616_020 0.1544857439 - - PREDICTED: peroxidase 3 [Jatropha curcas]
9 Hb_006351_040 0.155459505 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000334_090 0.1587868513 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
11 Hb_000163_170 0.1602045017 - - -
12 Hb_000352_360 0.1617710771 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
13 Hb_000015_190 0.163137311 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
14 Hb_003849_170 0.1643355607 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
15 Hb_003001_050 0.1644216926 - - hypothetical protein RCOM_1749890 [Ricinus communis]
16 Hb_001091_040 0.1644332869 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_000086_510 0.165489616 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_005144_150 0.166804949 - - hypothetical protein VITISV_013572 [Vitis vinifera]
19 Hb_001257_140 0.1695621067 - - Gb:AAF02129.1, putative [Theobroma cacao]
20 Hb_002869_090 0.1719219883 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]

Gene co-expression network

sample Hb_000071_040 Hb_000071_040 Hb_001616_010 Hb_001616_010 Hb_000071_040--Hb_001616_010 Hb_001213_060 Hb_001213_060 Hb_000071_040--Hb_001213_060 Hb_002020_010 Hb_002020_010 Hb_000071_040--Hb_002020_010 Hb_085829_010 Hb_085829_010 Hb_000071_040--Hb_085829_010 Hb_000086_530 Hb_000086_530 Hb_000071_040--Hb_000086_530 Hb_001856_260 Hb_001856_260 Hb_000071_040--Hb_001856_260 Hb_001616_010--Hb_000086_530 Hb_001616_010--Hb_002020_010 Hb_000220_020 Hb_000220_020 Hb_001616_010--Hb_000220_020 Hb_005144_150 Hb_005144_150 Hb_001616_010--Hb_005144_150 Hb_000139_460 Hb_000139_460 Hb_001616_010--Hb_000139_460 Hb_001213_060--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_001213_060--Hb_000334_090 Hb_003427_030 Hb_003427_030 Hb_001213_060--Hb_003427_030 Hb_000789_160 Hb_000789_160 Hb_001213_060--Hb_000789_160 Hb_000207_060 Hb_000207_060 Hb_001213_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_001213_060--Hb_034713_010 Hb_000237_060 Hb_000237_060 Hb_002020_010--Hb_000237_060 Hb_001091_040 Hb_001091_040 Hb_002020_010--Hb_001091_040 Hb_002020_010--Hb_000086_530 Hb_002020_010--Hb_005144_150 Hb_141096_010 Hb_141096_010 Hb_002020_010--Hb_141096_010 Hb_002020_010--Hb_001856_260 Hb_000086_510 Hb_000086_510 Hb_085829_010--Hb_000086_510 Hb_004705_060 Hb_004705_060 Hb_085829_010--Hb_004705_060 Hb_085829_010--Hb_000334_090 Hb_000017_250 Hb_000017_250 Hb_085829_010--Hb_000017_250 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000086_530--Hb_001856_260 Hb_000086_530--Hb_000237_060 Hb_000327_100 Hb_000327_100 Hb_000086_530--Hb_000327_100 Hb_007237_060 Hb_007237_060 Hb_000086_530--Hb_007237_060 Hb_000086_530--Hb_005144_150 Hb_001856_260--Hb_000237_060 Hb_001856_260--Hb_007237_060 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.270588 0.0705664 1.32506 8.55325 0.0675663 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.41174 0.874215

CAGE analysis