Hb_000071_070

Information

Type -
Description -
Location Contig71: 69916-81084
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03570g
description POPTRDRAFT_1088417; hypothetical protein
nr
ID XP_012065026.1
description PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID A0A067LJ25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05696 PE=4 SV=1
Gene Ontology
ID GO:0004674
description u-box domain-containing protein 33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55179: 72609-72898 , PASA_asmbl_55180: 72949-81066 , PASA_asmbl_55181: 72949-81066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_070 0.0 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
2 Hb_009620_020 0.1065052045 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003044_030 0.1164370379 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
4 Hb_000225_060 0.1210525101 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
5 Hb_000363_210 0.1248877617 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
6 Hb_008173_110 0.1276637229 - - DNA binding protein, putative [Ricinus communis]
7 Hb_050847_050 0.1279279204 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
8 Hb_002900_090 0.1289191244 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
9 Hb_001341_100 0.129015807 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
10 Hb_003266_100 0.130713494 - - Isomerase protein [Gossypium arboreum]
11 Hb_000402_190 0.1318438094 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
12 Hb_022256_020 0.1326750784 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
13 Hb_007811_050 0.1333551379 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
14 Hb_000649_110 0.1342757216 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_000484_130 0.1343513535 - - splicing factor, putative [Ricinus communis]
16 Hb_003994_060 0.134473045 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
17 Hb_006538_080 0.1347664507 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_004631_210 0.1349560574 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
19 Hb_000926_090 0.1372590618 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
20 Hb_000483_260 0.1384144133 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000071_070 Hb_000071_070 Hb_009620_020 Hb_009620_020 Hb_000071_070--Hb_009620_020 Hb_003044_030 Hb_003044_030 Hb_000071_070--Hb_003044_030 Hb_000225_060 Hb_000225_060 Hb_000071_070--Hb_000225_060 Hb_000363_210 Hb_000363_210 Hb_000071_070--Hb_000363_210 Hb_008173_110 Hb_008173_110 Hb_000071_070--Hb_008173_110 Hb_050847_050 Hb_050847_050 Hb_000071_070--Hb_050847_050 Hb_009620_020--Hb_000225_060 Hb_000011_400 Hb_000011_400 Hb_009620_020--Hb_000011_400 Hb_001123_320 Hb_001123_320 Hb_009620_020--Hb_001123_320 Hb_020025_040 Hb_020025_040 Hb_009620_020--Hb_020025_040 Hb_000483_260 Hb_000483_260 Hb_009620_020--Hb_000483_260 Hb_001021_080 Hb_001021_080 Hb_003044_030--Hb_001021_080 Hb_000152_660 Hb_000152_660 Hb_003044_030--Hb_000152_660 Hb_004064_010 Hb_004064_010 Hb_003044_030--Hb_004064_010 Hb_002028_220 Hb_002028_220 Hb_003044_030--Hb_002028_220 Hb_000402_190 Hb_000402_190 Hb_003044_030--Hb_000402_190 Hb_110560_010 Hb_110560_010 Hb_000225_060--Hb_110560_010 Hb_000099_150 Hb_000099_150 Hb_000225_060--Hb_000099_150 Hb_006538_080 Hb_006538_080 Hb_000225_060--Hb_006538_080 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_002701_010 Hb_002701_010 Hb_000225_060--Hb_002701_010 Hb_022256_020 Hb_022256_020 Hb_000363_210--Hb_022256_020 Hb_001189_140 Hb_001189_140 Hb_000363_210--Hb_001189_140 Hb_000983_090 Hb_000983_090 Hb_000363_210--Hb_000983_090 Hb_001104_170 Hb_001104_170 Hb_000363_210--Hb_001104_170 Hb_002217_170 Hb_002217_170 Hb_000363_210--Hb_002217_170 Hb_003082_010 Hb_003082_010 Hb_000363_210--Hb_003082_010 Hb_001653_020 Hb_001653_020 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57796 6.09678 5.21234 3.60307 1.7441 2.95956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53736 4.50694 6.13548 7.67045 1.39807

CAGE analysis